02-11-2013
My apologies, I didn't intend to be vague. That summary is correct. This is an aligned Next-gen sequencing file that I am attempting to manipulate. There is a family of repeat genes on chr3 in the range of 112,937,439 -113,437,438 that I am interested in exploring within my data. The file will have millions of "reads" on chr3, but I want to only extract the reads that fall:
1. only lines with field3="chr3" as Don already mentioned
2. The value of field 4 is in the mentioned range
Then I would like to have the whole line printed to a separate file.
Thank you for all of your help.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I want to grep a range of numbers in a log file. My log file looks like this:
20050807070609Z;blah blah
That is a combination of yr,month,date,hours,minutes,seconds.
I want to search in the log file events that happened between a particular time.
like between 20050807070000 to 20050822070000... (1 Reply)
Discussion started by: azmathshaikh
1 Replies
2. UNIX for Dummies Questions & Answers
Hi im new to unix and need to find a way to grep the top 5 numbers in a file and put them into another file. For example my file looks like this
abcdef 50000
abcdef 45000
abcdef 40000
abcdef 35000
abcdef 30000
abcdef 25000
abcdef 20000
abcdef 15000
abcdef 10000
and so on...
How can... (1 Reply)
Discussion started by: ProgChick2oo9
1 Replies
3. Shell Programming and Scripting
Howdy experts,
We have some ranges of number which belongs to particual group as below.
GroupNo StartRange EndRange
Group0125 935300 935399
Group2006 935400 935476
937430 937459
Group0324 935477 935549
... (6 Replies)
Discussion started by: thepurple
6 Replies
4. UNIX for Dummies Questions & Answers
Hello,
I have two columns with data that look like this:
Col1 Col2
------ -----
a 1
a 2
a 3
a 4
a 7
a 8
a 9
a 10
a 11
b 6
b 7
b 8
b 9
b 14 (5 Replies)
Discussion started by: Gussifinknottle
5 Replies
5. UNIX for Dummies Questions & Answers
Hello,
I have a column where there are values from 1 to 150.
I want to get the frequency of values in the following ranges:
1-5
6-10
11-15
....
....
....
146-150
How can I do this in a for loop?
Thanks,
Guss (1 Reply)
Discussion started by: Gussifinknottle
1 Replies
6. UNIX for Dummies Questions & Answers
Hi I have a data file with two columns which looks like:
1 42
2 40
3 55
4 50
5 38
6 49
7 33
8 46
9 39
10 33
11 33
12 26
13 46
14 44
15 55
16 54
17 30
18 32 (7 Replies)
Discussion started by: marhuu
7 Replies
7. Shell Programming and Scripting
out of a range of numbers, how can i pick out the number that is the closest to any arbitrary/random number that a user supplies?
say the range of numbers are between 1 - 90000. but that doesn't mean each number exist between 1 - 90000. the range of numbers could be for example:
1, 3, 4, 6,... (6 Replies)
Discussion started by: SkySmart
6 Replies
8. Shell Programming and Scripting
Dear Friends,
I want to know how to grep for the lines that has a number between given range(start and end).
I have tried the following sed command.
sed -n -e '/20030101011442/,/20030101035519/p'
However this requires both start and end to be part of the content being grepped. However... (4 Replies)
Discussion started by: tamil.pamaran
4 Replies
9. Shell Programming and Scripting
Hi,
I'm trying to match a filename that could be called anything from vout001 to vout252 and was trying to do a small test but I'm not getting the result I thought I would..
Can some one tell me what I'm doing wrong?
*****@********>echo $mynumber ... (4 Replies)
Discussion started by: Jazmania
4 Replies
10. Shell Programming and Scripting
Hi
I am getting an argument which specifies the range of numbers. eg: 7-15
Is there a way that i can easily (avoiding loop) print the range of number between and including the specified above.
The above example should translate to 7,8,9,10,11,12,13,14,15 (3 Replies)
Discussion started by: tostay2003
3 Replies
LEARN ABOUT REDHAT
prunehistory
PRUNEHISTORY(8) System Manager's Manual PRUNEHISTORY(8)
NAME
prunehistory - remove file names from Usenet history file
SYNOPSIS
prunehistory [ -f filename ] [ -p ]
DESCRIPTION
Prunehistory modifies the history(5) text file to ``remove'' a set of filenames from it. The filenames are removed by overwriting them
with spaces, so that the size and position of any following entries does not change.
Prunehistory reads the standard input. The input is taken as a set of lines. Blank lines and lines starting with a number sign (``#'')
are ignored. All other lines are should consist of a Message-ID followed by zero or more filenames.
The Message-ID is used as the dbz(3) key to get an offset into the text file. If no filenames are mentioned on the input line, then all
filenames in the text are ``removed.'' If any filenames are mentioned, they are converted into the history file notation. If they appear
in the line for the specified Message-ID then they are removed.
Since innd(8) only appends to the text file, prunehistory does not need to have any interaction with it.
OPTIONS
-p Prunehistory will normally complain about lines that do not follow the correct format. If the ``-p'' flag is used, then the program
will silently print any invalid lines on its standard output. (Blank lines and comment lines are also passed through.) This can be
useful when prunehistory is used as a filter for other programs such as reap.
-f The default name of the history file is <pathdb in inn.conf>/history; to specify a different name, use the ``-f'' flag.
HISTORY
Written by Rich $alz <rsalz@uunet.uu.net> for InterNetNews. This is revision 1.7, dated 1998/04/09.
SEE ALSO
dbz(3), history(5), inn.conf(5), innd(8).
PRUNEHISTORY(8)