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Top Forums Shell Programming and Scripting Printing from col x to end of line, except last col Post 302752949 by LMHmedchem on Monday 7th of January 2013 08:05:45 PM
Old 01-07-2013
Well that explains why sed was replacing all instances, since there was only one per line.

I am having trouble with some nested conditionals.

Code:
# if compounds were found for the class
if [ $MOLFILECOUNT -gt 0 ]
  then

#   sort list of class structures
    data_sort_rows_headerName.sh  $SETS'_sort_'*'.txt' \
                                  PASS1.txt  \
                                  SORT1.txt \
                                  '_makesdf_'$SETS'_'$MOLFILECOUNT'_'$DATASOURCE'_'$DATE_CODE'.txt'

# if the output file does not exist, use SORT1 to start the file
   if[ ! -f "$OUTPUFILE" ]
   then
      cp  SORT1.txt  TEMPOUTPUT1
   else
      cat TEMPOUTPUT1  SORT1.txt  > TEMPOUTPUT2
   fi

fi

This code is throwing an exception,

line 111: syntax error near unexpected token `then'
line 111: ` then'

I have highlighted the then that the error is referring to. I know I have used syntax like this before, so I'm not sure what the issue could be.

LMHmedchem
 

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COL(1)							      General Commands Manual							    COL(1)

NAME
col - filter reverse line feeds SYNOPSIS
col [ -bfh ] DESCRIPTION
Col reads the standard input and writes the standard output. It performs the line overlays implied by reverse line feeds (ESC-7 in ASCII) and by forward and reverse half line feeds (ESC-9 and ESC-8). Col is particularly useful for filtering multicolumn output made with the `.rt' command of nroff and output resulting from use of the tbl(1) preprocessor. Although col accepts half line motions in its input, it normally does not emit them on output. Instead, text that would appear between lines is moved to the next lower full line boundary. This treatment can be suppressed by the -f (fine) option; in this case the output from col may contain forward half line feeds (ESC-9), but will still never contain either kind of reverse line motion. If the -b option is given, col assumes that the output device in use is not capable of backspacing. In this case, if several characters are to appear in the same place, only the last one read will be taken. The control characters SO (ASCII code 017), and SI (016) are assumed to start and end text in an alternate character set. The character set (primary or alternate) associated with each printing character read is remembered; on output, SO and SI characters are generated where necessary to maintain the correct treatment of each character. If the -h option is given, col converts white space to tabs to shorten printing time. All control characters are removed from the input except space, backspace, tab, return, newline, ESC (033) followed by one of 7, 8, 9, SI, SO, and VT (013). This last character is an alternate form of full reverse line feed, for compatibility with some other hardware conven- tions. All other non-printing characters are ignored. SEE ALSO
troff(1), tbl(1) BUGS
Can't back up more than 128 lines. No more than 800 characters, including backspaces, on a line. 7th Edition May 16, 1986 COL(1)
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