Hi, everyone,
Let's say, we have
xxx.txt
A 1 2 3 4 5
C 1 2 3 4 5
E 1 2 3 4 5
yyy.txt
A 1 2 3 4 5
B 1 2 3 4 5
C 1 2 3 4 5
D 1 2 3 4 5
E 1 2 3 4 5
First I match the first column I find intersection (A,C, E), then I want to take those lines with ACE out from yyy.txt, like
A 1... (11 Replies)
Dear All,
I am new to this forum and please ignore my little knowledge :p
I have two types of data (a subset is given below)
data version 1:
439798 2 1
451209 1 2
508696 2 1
555760 2 1
582757 1 2
582889 1 2
691827... (2 Replies)
Hey guys,
I have two files. file1 and file2.
file1:
a,1
b,2
c,343
d,343
e,4343
f,4544
file 2:
a,
d,
e,
Now i need to find the common data between these files from file1.
i.e
a,1 (8 Replies)
Hi all,
I have 2 files
one file contain data like this in one column
AST3
GSTY4
JST3
second file containign data like this in 2 columns
AST3(PAXXX),GSTY4(PAXXY) it is used in diabetes
KST4 it is used in blood... (6 Replies)
Hi all
I have following file which I have to edit for research purpose
file:///tmp/moz-screenshot.png body, div, table, thead, tbody, tfoot, tr, th, td, p { font-family: "Liberation Sans"; font-size: x-small; } Drug: KRP-104 QD Drug: Placebo Drug: Metformin|Drug:... (15 Replies)
Hi all
I have to compare two files and find common entries
First file is like this
XVY
CVY
ZYN
MNA
In second file I have to search these entries in even number of columns
5 XVY 7 hdfj 8 CVY 9
if there is common entries then out put shuld be
5 XVY(approved) 7 hdfj 8... (11 Replies)
Hi Solved these kind of issues using these codes But these are not wrking for my attached files can anybody check........
awk 'NR==FNR{X++;next}{if(X){print}}' file1 file2
awk 'NR==FNR{X=$0;next}{n=split($1,P," ");sub($1,"",$0);for(i=1;i<=n;i++){if(X]){print P,$0}}}' file1 FS="\t" file2
... (6 Replies)
Hi all
I have 2 files:
first file
AABC
TTYP
JKBH
CVBN
NHJK
KJHM
Second file is
AABC,XCYU,JUHD Alllele1 GACXT It is approved study
TTYP,JKBH Allele2 PPRD It is clinical trial study
JKBH Allele2 PPRD ... (5 Replies)
Hi,
I have 10 files which needs to be print common words from those all files.
Is there any command to find out. (2 Replies)
Discussion started by: munna_dude
2 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)