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Full Discussion: Read column and find differences...
Top Forums Shell Programming and Scripting Read column and find differences... Post 302723267 by empyrean on Monday 29th of October 2012 07:25:53 PM
Old 10-29-2012
Read column and find differences...
I have this file

Code:
427	A	C	A/C	12
436	G	C	G/C	12
445	C	T	C/T	12
447	A	G	A/G	9
451	T	C	T/C	5
456	A	G	A/G	12
493	G	A	G/A	12


I wanted to read the first column and find all other ids which are differences less than 10.
Code:
427	A	C	A/C	12	436
436	G	C	G/C	12	427,445
445	C	T	C/T	12	436,447,451
447	A	G	A/G	9	445,451,456
451	T	C	T/C	5	445,447,456
456	A	G	A/G	12	451,447
493	G	A	G/A	12

The last column should be like the above. All id's which are + or - 10 bases apart from that specific id. For example for 436, the boundaries are {426 - 446} other id's which are in that range are 427 and 445 so i displayed them in 6th column..
 

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LEARN ABOUT DEBIAN

racount

RACOUNT(1)						      General Commands Manual							RACOUNT(1)

NAME

       racount - count things from an argus(8) data file/stream.

COPYRIGHT

       Copyright (c) 2000-2003 QoSient. All rights reserved.

SYNOPSIS

       racount -r argus-file [ra options]

DESCRIPTION

       Racount reads argus data from an argus-file list, and prints out various counts from the data in the file.

OPTIONS

       Racount, like all ra based clients, supports a number of ra options including filtering of input argus records through a terminating filter
       expression.  See ra(1) for a complete description of ra options.

EXAMPLE INVOCATION

       racount -r argus.file
       racount	  records	total_pkts	   src_pkts	    dst_pkts	  total_bytes	     src_bytes	      dst_bytes
	   sum	      279	      1112		661		 451	       165567		 94561		  71006

       racount -ar argus.file
       racount	  records	total_pkts	   src_pkts	    dst_pkts	  total_bytes	     src_bytes	      dst_bytes
	   tcp	       47	       777		405		 372	       119782		 66541		  53241
	   udp	      135	       180		137		  43		35987		 20466		  15521
	  icmp	       18		47		 40		   7		 3318		  2814		    504
	    ip	       50		50		 50		   0		 3000		  3000		      0
	   arp	       29		58		 29		  29		 3480		  1740		   1740
	   sum	      279	      1112		661		 451	       165567		 94561		  71006

       racount -r argus.file - tcp and retrans
       racount	  records	total_pkts	   src_pkts	    dst_pkts	  total_bytes	     src_bytes	      dst_bytes
	   tcp	       15	       276		141		 135		22073		  8758		  13315

AUTHORS

       Carter Bullard (carter@qosient.com).

SEE ALSO

       ra(1), rarc(5), argus(8) tcpdump(1),

								 07 November 2000							RACOUNT(1)
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