Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Extract columns by matching ids in two files Post 302620403 by ryan9011 on Sunday 8th of April 2012 06:09:19 AM
Old 04-08-2012
Extract columns by matching ids in two files

Hello,

I want to extract columns from file2 to file3 by matching ids between file1 and file2. The extracted columns should be in same order as file1 ids.

for example:

file1.txt
Code:
1823
607
R2A9
802
771



file2.txt
Code:
1823    1     2   4
22        11   4   29
607      12   3   3
R2A9   34   4   9
D33      2    1   0
802      30   8   1
771     3     0   9
3RE      6    3   1



output file3.txt should be printed in this way

Code:
1823    1     2   4
607      12   3   3
R2A9   34   4   9
802      30   8   1
7713     0   9

Please suggest me something.

Thanks,



Moderator's Comments:
Mod Comment Welcome to the UNIX and Linux Forums. Please use code tags. Video tutorial on how to use them

Last edited by Scrutinizer; 04-08-2012 at 07:23 AM..
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

matching IDs from two files and editting

I have two files. One has: ID# 0 a b c d e f g h i j k....................~2 milion columns ID# 0 l m n o p q r s t u v....................~2 milion columns . . . ~6000 lines Other has: ID# 1 or ID# 2 . . ~6000 lines (2 Replies)
Discussion started by: polly_falconer
2 Replies

2. Shell Programming and Scripting

matching columns from two files

Hey, I have two files that have exactly the same format. They are both tab-delimited and contain 12 columns. However the # of rows vary. What I want to do is match columns # 5,6 and 7 between the two files. If they do match exactly (based on numbers) then I want the whole row from file 2 to... (1 Reply)
Discussion started by: phil_heath
1 Replies

3. UNIX for Dummies Questions & Answers

Matching corresponding columns in two different files

Hi to all, I have two separated files: FILE1 "V1" "V2" "V3" Mary James Nicole Robert Francisco Sophie Nancy Antony Matt Josephine Louise Rose Mark Simon Charles FILE2 "V1" "V2" "V3"... (2 Replies)
Discussion started by: eleonoral
2 Replies

4. Shell Programming and Scripting

Help with awk Matching columns from two files

Hello, I have two files as following: #bin chrom chromStart chromEnd name score strand observed 585 chr2 29442 29443 rs4637157 0 + C/T 585 chr2 33011 33012 rs13423995 0 + A/G 585 chr2 34502 34503 rs13386087 0 + ... (2 Replies)
Discussion started by: Homa
2 Replies

5. Shell Programming and Scripting

Merge two files matching columns

Hi! I need to merge two files when col1 (x:x:x) matching and adds second column from file1.txt. # cat 1.txt aaa;a12 bbb;b13 ccc;c33 ddd;d55 eee;e11 # cat 2.txt bbb;b55;34444;d55 aaa;a15;35666;a44 I try with this awk and I get succesfully first column from 1.txt: # awk -F";"... (2 Replies)
Discussion started by: fhluque
2 Replies

6. Shell Programming and Scripting

Join two files with matching columns

Hi, I need to join two files together with one common value in a column. I think I can use awk or join or a combination but I can't quite get it. Basically my data looks like this, with the TICKER columns matching up in each file File1 TICKER,column 1, column, 2, column, 3, column 4 ... (6 Replies)
Discussion started by: unkleruckus
6 Replies

7. Shell Programming and Scripting

Compare 2 csv files by columns, then extract certain columns of matcing rows

Hi all, I'm pretty much a newbie to UNIX. I would appreciate any help with UNIX coding on comparing two large csv files (greater than 10 GB in size), and output a file with matching columns. I want to compare file1 and file2 by 'id' and 'chain' columns, then extract exact matching rows'... (5 Replies)
Discussion started by: bkane3
5 Replies

8. UNIX for Dummies Questions & Answers

Merging two files based on matching columns

Hi, I am facing issues while accomplishing below task. We have two files Test1.txt and Test2.txt. We have to match 1st column of Test1.txt file with 2nd column of Test2.txt and then merge 2nd file with the 1st file. In the output we should select column 1 and 2 from the 1st file and column 1... (5 Replies)
Discussion started by: Prathmesh
5 Replies

9. Shell Programming and Scripting

Joining Two Files Matching Two Columns

Hi All, I am looking to join two files where column 1 of file A matches with column 1 of file B and column 5 of files A matches with column 2 of file B. After joining the files based on above condition, out should contain entire line of file A and column 3, 4 and 5 of file B. Here is sample... (8 Replies)
Discussion started by: angshuman
8 Replies

10. UNIX for Beginners Questions & Answers

How to extract the partial matching strings among two files?

I have a two file as shown below, file:1 >Contig_152_415 (REVERSE SENSE) >Contig_152_420 (REVERSE SENSE) >Contig_152_472 (REVERSE SENSE) >Contig_152_484 (REVERSE SENSE) File:2 >Contig_152:49081-49929 ATCGAGCAGCGCCGCGTGCGGTGCACCCTTGTGCAGATCGGGAGTAACCACGCGCACGGC... (2 Replies)
Discussion started by: dineshkumarsrk
2 Replies
DIFF3(1)						      General Commands Manual							  DIFF3(1)

NAME
diff3 - 3-way differential file comparison SYNOPSIS
diff3 [ -exEX3 ] file1 file2 file3 DESCRIPTION
Diff3 compares three versions of a file, and publishes disagreeing ranges of text flagged with these codes: ==== all three files differ ====1 file1 is different ====2 file2 is different ====3 file3 is different The type of change suffered in converting a given range of a given file to some other is indicated in one of these ways: f : n1 a Text is to be appended after line number n1 in file f, where f = 1, 2, or 3. f : n1 , n2 c Text is to be changed in the range line n1 to line n2. If n1 = n2, the range may be abbreviated to n1. The original contents of the range follows immediately after a c indication. When the contents of two files are identical, the contents of the lower-numbered file is suppressed. Under the -e option, diff3 publishes a script for the editor ed that will incorporate into file1 all changes between file2 and file3, i.e. the changes that normally would be flagged ==== and ====3. Option -x (-3) produces a script to incorporate only changes flagged ==== (====3). The following command will apply the resulting script to `file1'. (cat script; echo '1,$p') | ed - file1 The -E and -X are similar to -e and -x, respectively, but treat overlapping changes (i.e., changes that would be flagged with ==== in the normal listing) differently. The overlapping lines from both files will be inserted by the edit script, bracketed by "<<<<<<" and ">>>>>>" lines. For example, suppose lines 7-8 are changed in both file1 and file2. Applying the edit script generated by the command "diff3 -E file1 file2 file3" to file1 results in the file: lines 1-6 of file1 <<<<<<< file1 lines 7-8 of file1 ======= lines 7-8 of file3 >>>>>>> file3 rest of file1 The -E option is used by RCS merge(1) to insure that overlapping changes in the merged files are preserved and brought to someone's atten- tion. FILES
/tmp/d3????? /usr/libexec/diff3 SEE ALSO
diff(1) BUGS
Text lines that consist of a single `.' will defeat -e. 7th Edition October 21, 1996 DIFF3(1)
All times are GMT -4. The time now is 06:12 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy