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Top Forums Shell Programming and Scripting FASTEST way to loop a script 10k times Post 302604758 by rdcwayx on Tuesday 6th of March 2012 12:38:26 AM
Old 03-06-2012
Code:
seq 1 10000 |while read line
do
  c-randomnumbers-script -i input1.bed -g g19 -e DB >> outputX${line}
  intesect-script -a outputX${line} -b input2.bed -wa -wa  -f1 |awk '!a[$4]++ {print $1, $2, $3, $4, $5, $6, $10}' OFS="\t" >> outputY${line};
  rm outputX${line}
done

You need explain the second rules more detail, I don't see 10th column in your sample stats.txt
Code:
Then output a table having 4th column and 10th column in a file named stats.txt and calculate mean and standard deviation of 7th column 0f 10k outputY* files

 

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service(8)						      System Manager's Manual							service(8)

NAME
service - run a System V init script SYNOPSIS
service SCRIPT COMMAND [OPTIONS] service --status-all service --help | -h | --version DESCRIPTION
service runs a System V init script in as predictable an environment as possible, removing most environment variables and with the current working directory set to /. The SCRIPT parameter specifies a System V init script, located in /etc/init.d/SCRIPT. The supported values of COMMAND depend on the invoked script. service passes COMMAND and OPTIONS to the init script unmodified. All scripts should support at least the start and stop commands. As a special case, if COMMAND is --full-restart, the script is run twice, first with the stop command, then with the start com- mand. service --status-all runs all init scripts, in alphabetical order, with the status command. EXIT CODES
service calls the init script and returns the status returned by it. FILES
/etc/init.d The directory containing System V init scripts. ENVIRONMENT
LANG, TERM The only environment variables passed to the init scripts. SEE ALSO
/etc/init.d/skeleton, update-rc.d(8), init(8), invoke-rc.d(8). Jan 2006 service(8)
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