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Top Forums Shell Programming and Scripting Search from one file and print the next line Post 302602734 by Feeqa on Tuesday 28th of February 2012 07:49:38 AM
Old 02-28-2012
Search from one file and print the next line

Hi,

I have a file that contain more than a 1000 entries like this in one file
Code:
P400000278
P400000446
P400000659
P400000789

I want to search in file that looks like this
Code:
>P400000278 Adenosine 3'-phospho 5'-phosphosulfate transporter
MVNPWKDYVKLSTVLMGSHGLTKGSLAFLNYPAQIMFKSAKVLPVMVMGAFVPGL
>P400000789 Vacuolar iron family transporter
MAETNSNGGFRAPLLRSLDGELEKGKGKNGRPKEPWKGEVVKSIVYAGLDAIVT
>P400000005 Vacuolar iron family transporter
MAETNSNGGFRAPLLRSLDGELEKGKGKNGRPKEPWKGEVVKSIVYAGLDAIVTSFSLII

I want output as following
Code:
>P400000278 Adenosine 3'-phospho 5'-phosphosulfate transporter
MVNPWKDYVKLSTVLMGSHGLTKGSLAFLNYPAQIMFKSAKVLPVMVMGAFV
>P400000789 Vacuolar iron family transporter
MAETNSNGGFRAPLLRSLDGELEKGKGKNGRPKEPWKGEVVKSIVYAGLDAIVT


Meaning that I want to print the next line as well as the line matching the pattern.

Can anyone help me with this?
Thanks in advance

Ashfaq

Last edited by Franklin52; 02-28-2012 at 09:10 AM.. Reason: Please use code tags for code and data samples, thank you
 

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bup-margin(1)						      General Commands Manual						     bup-margin(1)

NAME
bup-margin - figure out your deduplication safety margin SYNOPSIS
bup margin [options...] DESCRIPTION
bup margin iterates through all objects in your bup repository, calculating the largest number of prefix bits shared between any two entries. This number, n, identifies the longest subset of SHA-1 you could use and still encounter a collision between your object ids. For example, one system that was tested had a collection of 11 million objects (70 GB), and bup margin returned 45. That means a 46-bit hash would be sufficient to avoid all collisions among that set of objects; each object in that repository could be uniquely identified by its first 46 bits. The number of bits needed seems to increase by about 1 or 2 for every doubling of the number of objects. Since SHA-1 hashes have 160 bits, that leaves 115 bits of margin. Of course, because SHA-1 hashes are essentially random, it's theoretically possible to use many more bits with far fewer objects. If you're paranoid about the possibility of SHA-1 collisions, you can monitor your repository by running bup margin occasionally to see if you're getting dangerously close to 160 bits. OPTIONS
--predict Guess the offset into each index file where a particular object will appear, and report the maximum deviation of the correct answer from the guess. This is potentially useful for tuning an interpolation search algorithm. --ignore-midx don't use .midx files, use only .idx files. This is only really useful when used with --predict. EXAMPLE
$ bup margin Reading indexes: 100.00% (1612581/1612581), done. 40 40 matching prefix bits 1.94 bits per doubling 120 bits (61.86 doublings) remaining 4.19338e+18 times larger is possible Everyone on earth could have 625878182 data sets like yours, all in one repository, and we would expect 1 object collision. $ bup margin --predict PackIdxList: using 1 index. Reading indexes: 100.00% (1612581/1612581), done. 915 of 1612581 (0.057%) SEE ALSO
bup-midx(1), bup-save(1) BUP
Part of the bup(1) suite. AUTHORS
Avery Pennarun <apenwarr@gmail.com>. Bup unknown- bup-margin(1)
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