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Top Forums Shell Programming and Scripting Search from one file and print the next line Post 302602734 by Feeqa on Tuesday 28th of February 2012 07:49:38 AM
Old 02-28-2012
Search from one file and print the next line

Hi,

I have a file that contain more than a 1000 entries like this in one file
Code:
P400000278
P400000446
P400000659
P400000789

I want to search in file that looks like this
Code:
>P400000278 Adenosine 3'-phospho 5'-phosphosulfate transporter
MVNPWKDYVKLSTVLMGSHGLTKGSLAFLNYPAQIMFKSAKVLPVMVMGAFVPGL
>P400000789 Vacuolar iron family transporter
MAETNSNGGFRAPLLRSLDGELEKGKGKNGRPKEPWKGEVVKSIVYAGLDAIVT
>P400000005 Vacuolar iron family transporter
MAETNSNGGFRAPLLRSLDGELEKGKGKNGRPKEPWKGEVVKSIVYAGLDAIVTSFSLII

I want output as following
Code:
>P400000278 Adenosine 3'-phospho 5'-phosphosulfate transporter
MVNPWKDYVKLSTVLMGSHGLTKGSLAFLNYPAQIMFKSAKVLPVMVMGAFV
>P400000789 Vacuolar iron family transporter
MAETNSNGGFRAPLLRSLDGELEKGKGKNGRPKEPWKGEVVKSIVYAGLDAIVT


Meaning that I want to print the next line as well as the line matching the pattern.

Can anyone help me with this?
Thanks in advance

Ashfaq

Last edited by Franklin52; 02-28-2012 at 09:10 AM.. Reason: Please use code tags for code and data samples, thank you
 

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Devel::Refcount(3pm)					User Contributed Perl Documentation				      Devel::Refcount(3pm)

NAME
"Devel::Refcount" - obtain the REFCNT value of a referent SYNOPSIS
use Devel::Refcount qw( refcount ); my $anon = []; print "Anon ARRAY $anon has " . refcount($anon) . " reference "; my $otherref = $anon; print "Anon ARRAY $anon now has " . refcount($anon) . " references "; DESCRIPTION
This module provides a single function which obtains the reference count of the object being pointed to by the passed reference value. FUNCTIONS
$count = refcount($ref) Returns the reference count of the object being pointed to by $ref. COMPARISON WITH SvREFCNT This function differs from "Devel::Peek::SvREFCNT" in that SvREFCNT() gives the reference count of the SV object itself that it is passed, whereas refcount() gives the count of the object being pointed to. This allows it to give the count of any referent (i.e. ARRAY, HASH, CODE, GLOB and Regexp types) as well. Consider the following example program: use Devel::Peek qw( SvREFCNT ); use Devel::Refcount qw( refcount ); sub printcount { my $name = shift; printf "%30s has SvREFCNT=%d, refcount=%d ", $name, SvREFCNT($_[0]), refcount($_[0]); } my $var = []; printcount 'Initially, $var', $var; my $othervar = $var; printcount 'Before CODE ref, $var', $var; printcount '$othervar', $othervar; my $code = sub { undef $var }; printcount 'After CODE ref, $var', $var; printcount '$othervar', $othervar; This produces the output Initially, $var has SvREFCNT=1, refcount=1 Before CODE ref, $var has SvREFCNT=1, refcount=2 $othervar has SvREFCNT=1, refcount=2 After CODE ref, $var has SvREFCNT=2, refcount=2 $othervar has SvREFCNT=1, refcount=2 Here, we see that SvREFCNT() counts the number of references to the SV object passed in as the scalar value - the $var or $othervar respectively, whereas refcount() counts the number of reference values that point to the referent object - the anonymous ARRAY in this case. Before the CODE reference is constructed, both $var and $othervar have SvREFCNT() of 1, as they exist only in the current lexical pad. The anonymous ARRAY has a refcount() of 2, because both $var and $othervar store a reference to it. After the CODE reference is constructed, the $var variable now has an SvREFCNT() of 2, because it also appears in the lexical pad for the new anonymous CODE block. PURE-PERL FALLBACK An XS implementation of this function is provided, and is used by default. If the XS library cannot be loaded, a fallback implementation in pure perl using the "B" module is used instead. This will behave identically, but is much slower. Rate pp xs pp 225985/s -- -66% xs 669570/s 196% -- SEE ALSO
o Test::Refcount - assert reference counts on objects AUTHOR
Paul Evans <leonerd@leonerd.org.uk> perl v5.14.2 2011-11-15 Devel::Refcount(3pm)
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