Help with mySQL database by perl script Post: 302560344

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Top Forums Programming Help with mySQL database by perl script Post 302560344 by yifangt on Thursday 29th of September 2011 01:25:18 PM

09-29-2011

Registered User

Thank you so much Durden! It works now.

By the way, can I ask another question to create both the database and the tables, especially the tables, within perl script? What I meant is to integrate the mysql code(commented in my first post)

Code:

mysql> CREATE DATABASE Brapa0101_db; 
mysql> CREATE TABLE table01 (
         run int NOT NULL AUTO_INCREMENT  PRIMARY KEY, geneid VARCHAR(20), seqtype VARCHAR(50), scaffold VARCHAR(50),  
         seqstart INT(11), seqend INT(11), seqstrand VARCHAR(1), seqlength INT(11), cdsseq TEXT
         );

into the perl code. But I am not sure how to realize this idea. The reasons are:
1) It seems it can be done to me as for my learning purpose;
2) If it is done in perl script, then there is no need to go back and forth from mysql (to check the columns and the variable type etc) to my editor while writing the perl code. Here in your code the place holders did the trick, but if all are in perl code, it can be easier to control, especially with the split and joint functions.
3) Through this way, I can have full use of MySQL and do not need to go to the MySQL console;

Is this a dump question? Thanks again!

Yifang

yifangt

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LEARN ABOUT OPENSOLARIS

mysql_zap

zap(1)								  MySQL database							    zap(1)

NAME

       zap - a perl script used to kill processes

USAGE

       /usr/bin/mysql_zap [-signal] [-?Ift] pattern

SYNOPSIS

       zap [-I|-?]  [-f] [-t]

DESCRIPTION

       zap    supports by executing

       -I|-?  info

       -f     force

       -t     test

NOTE

       If  -f isn't given, ask user for confirmation for each process to kill. If signal isn't given, try first with signal 15 and after that with
       signal 9. If -t is given the processes is only shown on stdout.

SEE ALSO

       isamchk(1), isamlog(1), mysql(1), mysqlaccess(1), mysqladmin(1), mysqld(1), mysqld_multi(1), mysqld_safe(1), mysqldump(1), mysql_fix_privi-
       lege_tables(1), mysqlshow(1), perror(1), replace(1)

       For  more information please refer to the MySQL reference manual, which may already be installed locally and which is also available online
       at http://www.mysql.com/doc/en/

BUGS

       Please refer to http://bugs.mysql.com/ to report bugs.

AUTHOR

       Ver 1.0, distribution 4.0.24 Michael (Monty) Widenius (monty@mysql.com), MySQL AB (http://www.mysql.com/). This software comes with no war-
       ranty.  Manual  page  by L. (Kill-9) Pedersen (kill-9@kill-9.dk), Mercurmedia Data Model Architect / system developer (http://www.mercurme-
       dia.com)

ATTRIBUTES

       See attributes(5) for descriptions of the following attributes:

       +--------------------+------------------------------------+
       |  ATTRIBUTE TYPE    |	       ATTRIBUTE VALUE		 |
       +--------------------+------------------------------------+
       |Availability	    | SUNWmysqlr, SUNWmysqlu, SUNWmysqlt |
       +--------------------+------------------------------------+
       |Interface Stability | External				 |
       +--------------------+------------------------------------+
NOTES

       Source for mysql is available on http://opensolaris.org.

MySQL 4.0							 19 December 2000							    zap(1)