Hi,
how can i print the previous, current and next line using sed?
current line is the matching line.
The following prints all lines containing 'Failure' and also the immediate next line
cat $file | sed -n -e '/Failure/{N;p;}'
Now, i also want to print the previous line too.
Thanks,... (8 Replies)
HELLO...I wanted to ask you, than sure know unix more than me, as I can obtain the following solution: I have a file with rows of the type:
CIAO COME STAI
PERCHE COME STAI
CIAO COME VA
ALLO CHE FACCIAMO
.................
I would that if in a line is present the word (for example) " CHE... (9 Replies)
My requirement is that when ever search criteria matchs in log file, the previous line just above the search word as well as search word should be print.
sample log file
--03-19T11:26 xxx create version "a.sh@@/main/6"
"104157 "
--03-18T16:01 xxx create version "a.sh@@/main/5"
... (6 Replies)
Hi guys,
I have found your forum super useful. However, right now I am stuck on a seemingly "simple" thing in AWK. I have two columns of data, the first column in Age (in million years) and the second column is Convergence Rate (in mm/yr).
I am trying to process my data so I can use it to... (2 Replies)
Hi Guys
I have the following file
Essentially, I am trying to find the right awk/sed syntax in order to produce the following 3 distinct files from the file above:
Basically, I want to print the lines of the file as long as the second field of the current line is equal to the... (9 Replies)
Hi all,
From a while loop I am reading a sorted file where I want to print only the lines that have $1 match and $2 only when the difference from $2 from the previous line is > 30.
Input would be like ...
AN237 010 193019 0502 1 CSU Amoxycillin
AN237 080 ... (2 Replies)
Hi Everyone,
I have a file as below:
IM2345638,sherfvf,usha,30
IM384940374,deiufbd,usha,30
IM323763822,cdejdkdnbds,theju,15
0,dhejdncbfd,us,20
IM398202038,dhekjdkdld,tj,30
0,foifsjd,u2,40
The output i need is as below
IM2345638,sherfvf,usha,30... (4 Replies)
Hello,
I have below format log file,
Comparing csv_converted_files/2201/9747.1012H67126.5077292103609547345.csv and csv_converted_files/22019/97447.1012H67126.5077292103609547345.csv
Comparing csv_converted_files/2559/9447.1012H67126.5077292103609547345.csv and... (6 Replies)
Please help me
print nth line after match
awk or sed one line command. (3 Replies)
Discussion started by: sushma123
3 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)