Hi,
Is there any way to change one date format to another ?? I mean I have a file having dates in the format (Thu Sep 29 2005) ... and i wud like to change these to YYYYMMDD format .. is there any command which does so ?? Or anything like enum which we have in C ??
Thanks in advance,
... (5 Replies)
Hi,
There are lots of threads about how to manipulate the date using date +%m %.......
But how can I change the default format of the commad date?
$ date
Mon Apr 10 10:57:15 BST 2006
This would be on fedora and SunOs.
Cheers,
Neil (4 Replies)
Dear Experts,
Currently my script is gereating the output like this as mentioned below.
8718,8718,0,8777
7450,7450,0,7483
5063,5063,0,5091
3840,3840,0,3855
3129,3129,0,3142
2400,2400,0,2419
2597,2597,0,2604
3055,3055,0,3078
4249,4249,0,4266
4927,4927,0,4957
8920,8920,0,8978... (4 Replies)
Hi, I have a column in a table of Timestamp datatype. For Example : Var1 is the column 2008-06-26-10.10.30.2006. I have Given query as date(var1) and time (var1) I got the file as in the below format :
File1:
Col1 Col2
2008-06-02|12.36.06
2008-06-01|23.36.35
But the problem is... (7 Replies)
i have an variable mydate=2008Nov07
i want o/p as in variable mymonth=11 (i.e nov comes on 11 number month)
i want some command to do this for any month without using any loop.
plz help me (1 Reply)
Hi,
I'm in need of creating a file in the fasta format:
>1A6A.A
HVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITN
VPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR
VEHWGLDEPLLKHWEF
>1A6A.B ... (5 Replies)
I have a list of dates in the following format: mm/dd/yyyy and want to change these to the MySQL standard format: yyyy-mm-dd.
The dates in the original file may or may not be zero padded, so April is sometimes "04" and other times simply "4".
This is what I use to change the format:
sed -i '' -e... (2 Replies)
Hi all,
I have a file with below data
af23b|11-FEB-12|acc7
ad23b|12-JAN-12|acc4
as23b|15-DEC-11|acc5
z123b|18-FEB-12|acc1
I need the output as below:-(date in yyyymmdd format)
af23b|20120211|acc7
ad23b|20120112|acc4
as23b|20111215|acc5
z123b|20120218|acc1
Please help me on this.... (7 Replies)
Hi,
I am having a file of dna sequences in fasta format which look like this:
>admin_1_45
atatagcaga
>admin_1_46
atatagcagaatatatat
with many such thousands of sequences in a single file. I want to the replace the accession Id "admin_1_45" similarly in following sequences to... (5 Replies)
Hello all,
I am tryign to change the format of files (which are many in numbers). They at present are named like this:
SomeProcess_M-130_100_1_3BR.root
SomeProcess_M-130_101_2_3BX.root
SomeProcess_M-130_103_3_3RY.root
SomeProcess_M-130_105_1_3GH.root
SomeProcess_M-130_99_1_3LF.root... (7 Replies)
Discussion started by: emily
7 Replies
LEARN ABOUT DEBIAN
glam2format
GLAM2FORMAT(1) glam2 Manual GLAM2FORMAT(1)NAME
glam2format - converts GLAM2 motifs to FASTA or MSF format
SYNOPSIS
glam2format [options] my_format my_motif.glam2
Formats: fasta, msf.
DESCRIPTION
glam2format reads in a motif found by glam2, and writes it in a standard alignment format (FASTA-with-gaps or MSF). This enables the
alignment to be passed to third-party software, including graphical visualization tools such as Kalignvu, Boxshade, and WebLogo. On the
other hand, not all the motif information is preserved: in particular, the key positions are lost. Only the top motif in glam2 output is
converted.
OPTIONS (DEFAULT SETTINGS)-o
Output file (stdout).
-c
Make a compact alignment. By default, residues that are inserted between key positions are written as unaligned with each other. This
best reflects glam2's intention, but it can make the alignment large and full of gaps. With -c, inserted residues are written as
arbitrarily aligned with each other, just as they appear in the glam2 output.
-f
Sequence file to make a "global" alignment by adding flanking sequences from the original FASTA-format sequence file. The flanking
sequences will be written as either unaligned with each other or arbitrarily aligned, depending on the -c option. The sequences should
have unique names and their order should be unchanged.
SEE ALSO boxshade(1), glam2(1), glam2mask(1), glam2-purge(1), glam2scan(1)
The full Hypertext documentation of GLAM2 is available online at http://bioinformatics.org.au/glam2/ or on this computer in
/usr/share/doc/glam2/.
REFERENCE
If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey (2008) Discovering sequence motifs with arbitrary insertions and
deletions, PLoS Computational Biology (in press).
AUTHORS
Martin Frith
Author of GLAM2.
Timothy Bailey
Author of GLAM2.
Charles Plessy <plessy@debian.org>
Formatted this manpage in DocBook XML for the Debian distribution.
COPYRIGHT
The source code and the documentation of GLAM2 are released in the public domain.
GLAM2 1056 05/19/2008 GLAM2FORMAT(1)