Sponsored Content
Top Forums Shell Programming and Scripting Removing distances from Newick tree format Post 302496130 by Xterra on Saturday 12th of February 2011 10:55:19 AM
Old 02-12-2011
It works perfectly!

Sorry about missing one of the brackets.
 

10 More Discussions You Might Find Interesting

1. Programming

directory as tree

hi i have modified a program to display directory entries recursively in a tree like form i need an output with the following guidelines: the prog displays the contents of the directory the directory contents are sorted before printing so that directories come before regular files if an entry... (2 Replies)
Discussion started by: anything2
2 Replies

2. Shell Programming and Scripting

directory tree

Hi all, The following is a script for displaying directory tree. D=${1:-`pwd`} (cd $D; pwd) find $D -type d -print | sort | sed -e "s,^$D,,"\ -e "/^$/d"\ -e "s,*/\(*\)$,\:-----\1,"\ -e "s,*/,: ,g" | more exit 0 I am trying to understand the above script.But... (3 Replies)
Discussion started by: ravi raj kumar
3 Replies

3. Shell Programming and Scripting

process tree

how to draw a process tree if i know my process id and how can i identify session leaders (1 Reply)
Discussion started by: annapurna konga
1 Replies

4. Shell Programming and Scripting

AWK code for finding distances between atoms in two different files

Hi:) I have two separate data files (.xyz) type and I want to see distances between the coordinates of atoms of the two files. For example:- My first files contains 1 1 1 11.50910000 5.17730000 16.49360000 3 1 2 11.21790000 6.36062000 15.60660000 6 1 2 ... (4 Replies)
Discussion started by: ananyob
4 Replies

5. Shell Programming and Scripting

how to calculate all pairwise distances in two dimensions and transform them into a matrix

Hello to all, I am very new in the shell scripting and I need help. I have data for several individuals in several rows followed by a tag and by 5 values per row, with the name of the individual in the first column, e.g.: IND1 H1 12 13 12 15 14 IND2 H2 12 12 15 14 14 IND3 H1 12 15... (2 Replies)
Discussion started by: Bemar
2 Replies

6. Shell Programming and Scripting

removing html format with sed

Hello i am trying to remove the html format from the file using sed. for example remove <p> </p> i tried to do this : sed -e 's/<*>//g' test > test.t but still i have some html format . please help if you have any suggestions lets say this is the html file 1... (11 Replies)
Discussion started by: koricha
11 Replies

7. Shell Programming and Scripting

Eliminating sequences based on Distances

I have to remove sequences from a file based on the distance value. I am attaching the file containing the distances (Distance.xls) The second file looks something like this: Sequences.txt >Sample1 Freq 59 ggatatgatgatgaactggt >Sample1 Freq 54 ggatatgatgttgaactggt >Sample1 Freq 44... (2 Replies)
Discussion started by: Xterra
2 Replies

8. UNIX for Dummies Questions & Answers

How to find directory listing from root to all files in tree format with details of perm/own/grp?

Hi, My apologies if my query is already available on this forum but I am new and could not find. I need a script to list all directories/sub directories and files with permissions/groups/owners. The script would run from home directory and should capture every directory. How do I do this? ... (4 Replies)
Discussion started by: 8709711
4 Replies

9. UNIX for Dummies Questions & Answers

Removing PATTERN from txt without removing lines and general text formatting

Hi Everybody! First post! Totally noobie. I'm using the terminal to read a poorly formatted book. The text file contains, in the middle of paragraphs, hyphenation to split words that are supposed to be on multiple pages. It looks ve -- ry much like this. I was hoping to use grep -v " -- "... (5 Replies)
Discussion started by: AxeHandle
5 Replies

10. Shell Programming and Scripting

Parsing of Newick tree format files

Dear all, I have >5000 files in newick tree format (which generally used for representing phylogenetic relationships) something like below. ... (3 Replies)
Discussion started by: ashmit99
3 Replies
VGREDUCE(8)						      System Manager's Manual						       VGREDUCE(8)

NAME
vgreduce - reduce a volume group SYNOPSIS
vgreduce [-a|--all] [-A|--autobackup y|n] [-d|--debug] [-h|-?|--help] [--removemissing] [-t|--test] [-v|--verbose] VolumeGroupName [Physi- calVolumePath...] DESCRIPTION
vgreduce allows you to remove one or more unused physical volumes from a volume group. OPTIONS
See lvm for common options. -a, --all Removes all empty physical volumes if none are given on command line. --removemissing Removes all missing physical volumes from the volume group, if there are no logical volumes allocated on those. This resumes normal operation of the volume group (new logical volumes may again be created, changed and so on). If this is not possible (there are logical volumes referencing the missing physical volumes) and you cannot or do not want to remove them manually, you can run this option with --force to have vgreduce remove any partial LVs. Any logical volumes and dependent snapshots that were partly on the missing disks get removed completely. This includes those parts that lie on disks that are still present. If your logical volumes spanned several disks including the ones that are lost, you might want to try to salvage data first by acti- vating your logical volumes with --partial as described in lvm (8). SEE ALSO
lvm(8), vgextend(8) Sistina Software UK LVM TOOLS 2.02.67(2) (2010-06-04) VGREDUCE(8)
All times are GMT -4. The time now is 05:16 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy