my solaris text talks about the 'find' command... it further goes to talk about an "action" used with the find command.
I am completely confused as to what the {} do with the find comand.
the explanation is this: "A set of braces, {}, delimits where the file name is passed to the command from... (2 Replies)
Hi All,
I am trying to use the find command to search and delete files and have the following scenario. How come the file in the current directory is not getting listed out?
/glo71sw/716/devl/userdata/ftpord --> ls -lt XSKU*
-rw-r--r-- 1 root sys 137493 Jul 7 18:30... (6 Replies)
I am not sure if this question has been answered earlier at the Unix Forums. I tried a search but could not find anything.
So here it goes...
I am looking for a log file under /home.
find /home dklog.log -print
This prints all the directories it traverses while looking for the file and in... (4 Replies)
Hi All,
I have wrote a command to find a and remove all *.apr files ina directory .
Now i got the request as reversed , They want to remove all files except *.apr in the direcory .
Is it possible to do that in a find comand else i have give an explicit find command to all *. files to... (1 Reply)
I'm using this in AIX to find what file contains the value 'batch' in it, in all directories.
find / -type f -exec grep -l batch {} /dev/null \;
My question is, what if I only wanted to search *.sh files, and I wanted to pipe the results to a file called 'batch_find.txt'. How could I code... (3 Replies)
Hello!
I have written this script:
for file in "$( find $dirName -type d )"
do
echo "$file"
echo "hello"
done
but as a result I get all the directories and in the end the work "hello". Shouldn't it print the word "hello" after printing the name of each directory and not in the end?
... (1 Reply)
Hi
I need to find the command ("find" , "grep" etc..) which would give me the full path and file name of all the files in the entire directory tree which contain the line "/bbsrc/doc/". What would be the most efficient way to do it? Thanks a lot for advice -A (6 Replies)
Hi,
I want to search in the log directory only. This log directory exists at mutiple places in my directory tree. I know that to exclude any directory we have option - prune but can we do the just opposite of it.. just check a single directory and exclude the rest.
thanks (3 Replies)
Hi all,
I want to use find to 'find' files older than a file.
The command I have come up with so far is
find . -type f ! -newer filename -print | grep -v filename
If I dont use the -v then the filename is included in the output
is there a better way of formulating this command... (1 Reply)
I need to find all files with file names starting with
alert
and ending with
.log
I mean, the following files should be returnrned
alertTST.log
alertabcdefgh.log
How can i do this ? (4 Replies)
Discussion started by: kraljic
4 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)