Sponsored Content
Full Discussion: Some Awk Getline help?
Top Forums Shell Programming and Scripting Some Awk Getline help? Post 302426682 by Scrutinizer on Wednesday 2nd of June 2010 02:47:51 PM
Old 06-02-2010
Perhaps you are looking for something a bit like this? This would probably limit the searching:
Code:
awk '$3!=f{close(f);f=$3;n=0}{while(!p && getline x<f) if(++n==$2){p=1};print x;p=0}' subset.txt

This will open and close only those files that are specified in subset.txt and look for the right line number and print the record it finds on that line. For efficiency reasons subset.txt would best be sorted..

Output:
Code:
rs10001 900 900 100 100
rs10004 999 121 232 434


Last edited by Scrutinizer; 06-02-2010 at 04:12 PM.. Reason: "!p" and "getline x<f" meeded to be reversed
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

awk:Problem with getline

$ echo |awk ' BEGIN {"date" | getline current_time;close("date");print "Report printed on " current_time}' Report printed on Thu May 11 14:57:29 METDST 2006 This example works fine but how can i print all the output when is longer... (3 Replies)
Discussion started by: Klashxx
3 Replies

2. Shell Programming and Scripting

awk getline help maybe?

hello collegues, I am attempting to use awk to search file1 (serverlist.csv) from each row with file2 (supported.txt). If the is no entry exists in serverlist then output to a file called notsupp.out if there is an entry output to supp.out I can do this with basic shell scripting however... (0 Replies)
Discussion started by: chlawren
0 Replies

3. Shell Programming and Scripting

awk and system getline

Hello, Need some help here. I have this script (test.sh): #!/bin/sh var=$1 (( var = 2 * var )) echo $var Now I want to call this script from awk with one argument and then capture the result in a variable, something like: echo 40 | awk ' { x = $1; "test.sh " x | getline y; print y }... (1 Reply)
Discussion started by: fbg
1 Replies

4. Shell Programming and Scripting

awk getline

How do you make the getline function return to the original line? The example below should make it clear where I am currently going wrong. Thanks AWK SCRIPT: ------------- awk -F '-' '{ tmpLine = "EMPTY" print "CURRENT LINE :"$0 getline tmpLine print "NEXT LINE :"tmpLine }'... (1 Reply)
Discussion started by: garethsays
1 Replies

5. Shell Programming and Scripting

Using getline in awk

I am using awk and want to use getline from a file like below getline x < file However file consists of two columns and I only want to store $2 Any way I can do this? ---------- Post updated at 06:54 AM ---------- Previous update was at 06:45 AM ---------- Done something like this.... (1 Reply)
Discussion started by: kristinu
1 Replies

6. Shell Programming and Scripting

awk getline question

Hi there, I have an ifconfig output and i want to write a script that determines whether there is a line "groupname ipmp" on a particular interface here is my example ifconfig -a output lo0: flags=2001000849<UP,LOOPBACK,RUNNING,MULTICAST,IPv4,VIRTUAL> mtu 8232 index 1 inet 127.0.0.1... (2 Replies)
Discussion started by: rethink
2 Replies

7. Shell Programming and Scripting

awk getline t file

I want to import a textfile with getline into var t which has several lines. How do import all lines, since it only imports the last line: while < ((getline t "textfile") > 0) (7 Replies)
Discussion started by: sdf
7 Replies

8. Shell Programming and Scripting

awk getline problem

Hello, I want to print out the DNA sequence entries (tens of thousand!) that are longer than certain value (i=200) from a file (FASTA file) as: >S94D_ctg_8004 Average coverage: 402.95 ATAATGCCTGTGAATATGACATGTGTTCCTGTTTCTACATCAGACTACTATTCTTGCATA... (12 Replies)
Discussion started by: yifangt
12 Replies

9. Shell Programming and Scripting

awk getline

Hi, I have an awk script with the following function in it . function cmd( c ) { while( ( c | getline foo) > 0 ){ return foo ; close( c ); } } c =... (4 Replies)
Discussion started by: MetaMan
4 Replies

10. Shell Programming and Scripting

awk with if, getline, and another if

Howdy Folks, It seems like it is always awk that confuses the heck out of me and I even have books and examples. I have this line: awk '{if (/clientIP/)(SRV = $NF); if ($2 ~ /BUNDLE-GIM/) getline; if ($2 ~ /r100595/) {print SRV,"BUNDLE-GIM",$2}}' post.txt to parse this text: <api... (4 Replies)
Discussion started by: port43
4 Replies
GETLINE(3)						   BSD Library Functions Manual 						GETLINE(3)

NAME
getdelim, getline -- get a line from a stream LIBRARY
Standard C Library (libc, -lc) SYNOPSIS
#include <stdio.h> ssize_t getdelim(char ** restrict linep, size_t * restrict linecapp, int delimiter, FILE * restrict stream); ssize_t getline(char ** restrict linep, size_t * restrict linecapp, FILE * restrict stream); DESCRIPTION
The getdelim() function reads a line from stream, delimited by the character delimiter. The getline() function is equivalent to getdelim() with the newline character as the delimiter. The delimiter character is included as part of the line, unless the end of the file is reached. The caller may provide a pointer to a malloced buffer for the line in *linep, and the capacity of that buffer in *linecapp. These functions expand the buffer as needed, as if via realloc(). If linep points to a NULL pointer, a new buffer will be allocated. In either case, *linep and *linecapp will be updated accordingly. RETURN VALUES
The getdelim() and getline() functions return the number of characters written, excluding the terminating NUL character. The value -1 is returned if an error occurs, or if end-of-file is reached. EXAMPLES
The following code fragment reads lines from a file and writes them to standard output. The fwrite() function is used in case the line con- tains embedded NUL characters. char *line = NULL; size_t linecap = 0; ssize_t linelen; while ((linelen = getline(&line, &linecap, fp)) > 0) fwrite(line, linelen, 1, stdout); ERRORS
These functions may fail if: [EINVAL] Either linep or linecapp is NULL. [EOVERFLOW] No delimiter was found in the first SSIZE_MAX characters. These functions may also fail due to any of the errors specified for fgets() and malloc(). SEE ALSO
fgetln(3), fgets(3), malloc(3) STANDARDS
The getdelim() and getline() functions conform to IEEE Std 1003.1-2008 (``POSIX.1''). HISTORY
These routines first appeared in FreeBSD 8.0. BUGS
There are no wide character versions of getdelim() or getline(). BSD
November 30, 2010 BSD
All times are GMT -4. The time now is 10:31 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy