Hi.
Can I extract the last 3 characters from a given string using sed ?
Why the following doesn't work (it prints the full string) :
echo "abcd" | sed '/\.\.\.$/p' doesn't work ?
output: abcd
Thanks in advance,
435 Gavea. (7 Replies)
Hello, my name is Marc, I'm a linux starter :) and I hope you specialists can help me solving this issue.
I have a file containing a lot of data. Somewhere in this file, there's a string called "Faultdump", directly followed by 64 chars of HEX data. I need to get the HEX part. I accomplished... (12 Replies)
I know this has been asked previously on this forum...But I think I have a different scenario to present.
I ahve a file tht looks like this (note:there are control Z and other chars tht are not visible on line with anme bowers)
BB7118450 6004718 BIANCALANA =HEI
BZ5842819 ... (4 Replies)
Hello,
I have a file temp.txt:
-------------------------
HELLO WORLD
This is a temp file.
TENCHARSHEre
no beginning UPPERCHARS
HI There
-------------------------
What is a sed egrep command that will target lines that begin with 3-10 uppercase chars, and output the first 2 chars?... (5 Replies)
Hi I'm new to sed, and need to add characters into a specific location of a file, the fileds are tab seperated.
text <tab> <tab> text <tab> text EOL
I need to add more characters to the line to look like this:
text <tab> <tab> newtext <tab> text <tab> text EOL
Any ideas? (2 Replies)
Hi,
For years ive been using this script to do mass search & replaces on our websites. Its worked with all sorts of spaces, quotes, html or whatever with a little adjusting here and there. But I just cant get this pattern to work:
#!/bin/bash
OLDURL="document.write('<script... (2 Replies)
Hi all,
I hope you guys can help me.
I prefer SED/AWK solutions if possible. For my shame it didn't work for me :o
ISSUE: :wall:
1\3
1/$4\@7\
1234567890123456789\
1234567890123456789,\
1234567890123456789\
123456789012
12345
1234567890123456789\
1234567890123456789,\
1234... (5 Replies)
HI All
Im trying to come up with an approach to finding a string, using a portion of that string to insert it on lines starting with the value "GOTO" appending to end of line after removing PT's ( See example below! )
EXAMPLE:
1. I would like to search for the line that starts with "TLAXIS/"... (7 Replies)
For a given string that may contain any ASCII chars, i.e. that matches .*,
find and print only the chars that are in a given subset.
The string could also have numbers, uppercase, special chars such as ~!@#$%^&*(){}\", whatever a user could type in
without going esoteric
For simplicity take... (1 Reply)
Discussion started by: naderra
1 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)