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Full Discussion: how to match a numers from file1 to file 2??Ps help me..
Top Forums Shell Programming and Scripting how to match a numers from file1 to file 2??Ps help me.. Post 302413191 by sureshraj on Thursday 15th of April 2010 12:13:48 AM
Old 04-15-2010
how to match a numers from file1 to file 2??Ps help me..
Hi firends,
I need to write a program in perl for following task,
I have a data like following numbers in file1.txt
Code:
1061338
1159781
1161717
1920355
1924487
2996733
3121872
3124510

I have to search the matching numbers in file2,my file2 is have a multiple columns like this
Code:
rs3934834	  1	   1045729	   A	G	0.1791	0.2054	0.8441	
rs3737728	  1	   1061338	   A	G	0.2845	0.2809	1.018	
rs6687776	  1	   1070488	   A	G	0.1768	0.1956	0.8833
rs9651273	  1	   1071463	   A	G	0.2743	0.2689	1.028	
rs4970405	  1	   1088878	   G	A	0.0922	0.0757	1.24	
rs1272625	  1	   1089873   G	A	0.1369	0.1231	1.13	
rs2298217	  1	   1104902   A	G	0.1448	0.1542	0.9286	
rs4970362	  1	   1134661	   A	G	0.3793	0.3954	0.9346

the underlined column have to matched with file1..But i dont know how to write a program for this task..I need out put like file2 for matching numbers only...Pls any one help me & give me a program in perl..
my output should be like
Code:
rs6596796	6	120522	A	G	0.1058	0.09469	
rs1535053	6	126089	G	A	0.2155	0.2151	
rs12192106	6	137664	A	G	0.06956	0.07949	
rs6913464	6	139090	A	G	0.1702	0.1663	
rs9405480	6	144199	A	G	0.1869	0.1771	
rs9392299	6	148909	G	A	0.07122	0.06203	
rs1418708	6	150610	A	G	0.1386	0.1374
rs1418707	6	150800	G	A	0.192	       0.1631

Last edited by zaxxon; 04-15-2010 at 03:42 AM.. Reason: use code tags please, ty
 

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LEARN ABOUT DEBIAN

zcmp

ZDIFF(1)						      General Commands Manual							  ZDIFF(1)

NAME

       zcmp, zdiff - compare compressed files

SYNOPSIS

       zcmp [ cmp_options ] file1 [ file2 ]
       zdiff [ diff_options ] file1 [ file2 ]

DESCRIPTION

       Zcmp  and  zdiff are used to invoke the cmp or the diff program on files compressed via gzip.  All options specified are passed directly to
       cmp or diff.  If only file1 is specified, it is compared to the uncompressed contents of file1.gz.  If two files are specified, their  con-
       tents  (uncompressed  if  necessary)  are  fed to cmp or diff.  The input files are not modified.  The exit status from cmp or diff is pre-
       served.

SEE ALSO

       cmp(1), diff(1), zmore(1), zgrep(1), znew(1), zforce(1), gzip(1), gzexe(1)

BUGS

       Messages from the cmp or diff programs may refer to file names such as "-" instead of to the file names specified.

																	  ZDIFF(1)
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