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Top Forums Shell Programming and Scripting Extract all content that match exactly only specific word Post 302412248 by patrick87 on Monday 12th of April 2010 06:05:26 AM
Old 04-12-2010
Hi,
Thanks for your reply.
It seems like no worked in my case Smilie

---------- Post updated at 05:05 AM ---------- Previous update was at 05:01 AM ----------

Hi,
Thanks for your sugguestion.
But it seems like the grep code can't print out the first line inside my output result.
Code:
egrep -w ID=_52 file
21      templeta        kids    35718   36554   .       -       .       ID=_52; Parent=parent_cluster_5085.21.11;
21      templeta        location        35840   36073   .       -       .       ID=_5285.location4; Parent=_5285
21      templeta        pattern 35840   36073   .       -       0       ID=_52.cds4; Parent=_5285
21      templeta        location        35718   35778   .       -       .       ID=_5285.location5; Parent=_5285
21      templeta        pattern 35758   35778   .       -       0       ID=_52.cds5; Parent=_5285
21      templeta        length  35718   35757   .       -       .       ID=_52.utr3p1; Parent=_5285

Desired output:
Code:
21      templeta        parent  35718   36554   .       -       .       ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21      templeta        kids    35718   36554   .       -       .       ID=_52; Parent=parent_cluster_5085.21.11;
21      templeta        location        35840   36073   .       -       .       ID=_5285.location4; Parent=_5285
21      templeta        pattern 35840   36073   .       -       0       ID=_52.cds4; Parent=_5285
21      templeta        location        35718   35778   .       -       .       ID=_5285.location5; Parent=_5285
21      templeta        pattern 35758   35778   .       -       0       ID=_52.cds5; Parent=_5285
21      templeta        length  35718   35757   .       -       .       ID=_52.utr3p1; Parent=_5285

Do you got any other suggestion?
Thanks.
 

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Data::Grove::Parent(3)					User Contributed Perl Documentation				    Data::Grove::Parent(3)

NAME
Data::Grove::Parent - provide parent properties to Data::Grove objects SYNOPSIS
use Data::Grove::Parent; $root = $object->root; $rootpath = $object->rootpath; $tied = $object->add_magic([ $parent ]); $node = Data::Grove::Parent->new($hash [, $parent]); $node_list = Data::Grove::ParentList->new($array [, $parent]); DESCRIPTION
Data::Grove::Parent is an extension to Data::Grove that adds `"Parent"' and `"Raw"' properties to Data::Grove objects and methods for returning the root node of a grove, a list of nodes between and including the root node and the current node, and a method that creates parented nodes. Data::Grove::Parent works by creating a Perl ``tied'' object that contains a parent reference (`"Parent"') and a reference to the original Data::Grove object (`"Raw"'). Tying-magic is used so that every time you reference the Data::Grove::Parent object it actually references the underlying raw object. When you retrieve a list or a property of the Raw object, Data::Grove::Parent automatically adds magic to the returned list or node. This means you only call `add_magic()' once to create the first Data::Grove::Parent object and then use the grove objects like you normally would. The most obvious use of this is so you don't have to call a `"delete"' method when you want to release a grove or part of a grove; since Data::Grove and Data::Grove::Parent objects have no cyclic references, Perl can garbage collect them normally. A secondary use is to allow you to reuse grove or property set fragments in multiple trees. WARNING: Data::Grove currently does not protect you from creating your own cyclic references! This could lead to infinite loops if you don't take care to avoid them. METHODS
$object->root() $object->rootpath() `"root()"' returns the root node if `$object' is a `"Data::Grove::Parent"' object. `"rootpath()"' returns an array of all the nodes between and including the root node and `$object'. $tied = $object->add_magic([ $parent ]) `"add_magic()"' returns a "Data::Grove::Parent" object with `$object' as it's `"Raw"' object. If `$parent' is given, that becomes the tied object's parent object. AUTHOR
Ken MacLeod, ken@bitsko.slc.ut.us SEE ALSO
perl(1), Data::Grove(3) perl v5.16.3 2003-10-21 Data::Grove::Parent(3)
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