Sponsored Content
Top Forums Shell Programming and Scripting Extract all content that match exactly only specific word Post 302412248 by patrick87 on Monday 12th of April 2010 06:05:26 AM
Old 04-12-2010
Hi,
Thanks for your reply.
It seems like no worked in my case Smilie

---------- Post updated at 05:05 AM ---------- Previous update was at 05:01 AM ----------

Hi,
Thanks for your sugguestion.
But it seems like the grep code can't print out the first line inside my output result.
Code:
egrep -w ID=_52 file
21      templeta        kids    35718   36554   .       -       .       ID=_52; Parent=parent_cluster_5085.21.11;
21      templeta        location        35840   36073   .       -       .       ID=_5285.location4; Parent=_5285
21      templeta        pattern 35840   36073   .       -       0       ID=_52.cds4; Parent=_5285
21      templeta        location        35718   35778   .       -       .       ID=_5285.location5; Parent=_5285
21      templeta        pattern 35758   35778   .       -       0       ID=_52.cds5; Parent=_5285
21      templeta        length  35718   35757   .       -       .       ID=_52.utr3p1; Parent=_5285

Desired output:
Code:
21      templeta        parent  35718   36554   .       -       .       ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21      templeta        kids    35718   36554   .       -       .       ID=_52; Parent=parent_cluster_5085.21.11;
21      templeta        location        35840   36073   .       -       .       ID=_5285.location4; Parent=_5285
21      templeta        pattern 35840   36073   .       -       0       ID=_52.cds4; Parent=_5285
21      templeta        location        35718   35778   .       -       .       ID=_5285.location5; Parent=_5285
21      templeta        pattern 35758   35778   .       -       0       ID=_52.cds5; Parent=_5285
21      templeta        length  35718   35757   .       -       .       ID=_52.utr3p1; Parent=_5285

Do you got any other suggestion?
Thanks.
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

How to search files containing a specific word in the content

Hi all, Lets say I have 3 files a.txt and b.txt and c.txt. a.txt has the following text ==================== apple is good for health b.txt has the following text ==================== apple is pomme in french c.txt has the following text ==================== orange has citric acid... (1 Reply)
Discussion started by: amjath78
1 Replies

2. Shell Programming and Scripting

Shell script or command help to extract specific contents from a long list of content

Hi, I got a long list of contents: >sequence_1 ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC ASDSFDFFDFDFFWERERERERFSDFESFSFD >sequence_2 ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS >sequence_3 VEDFGSDGSDGSDGSDGSDGSDGSDG dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Discussion started by: patrick87
2 Replies

3. Shell Programming and Scripting

Extract specific content from a file

My input file: >sequence_1 ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC ASDSFDFFDFDFFWERERERERFSDFESFSFD >sequence_2 ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS >sequence_3 VEDFGSDGSDGSDGSDGSDGSDGSDG dDFSDFSDFSDFSDFSDFSDFSDFSDF SDGFDGSFDGSGSDGSDGSDGSDGSDG My... (22 Replies)
Discussion started by: patrick87
22 Replies

4. Shell Programming and Scripting

Extract all the content after a specific data

My input: >seq_1 DSASSTRRARRRRTPRTPSLRSRRSDVTCS >seq_3 RMRLRRWRKSCSERS*RRSN >seq_8 RTTGLSERPRLPTTASRSISSRWTR >seq_10 NELPLEKGSLDSISIE >seq_9 PNQGDAREPQAHLPRRQGPRDRPLQAYA+ QVQHRRHDHSRTQH*LCRRRQREDCDRLHR >seq_4 DRGKGQAGCRRPQEGEALVRRCS>seq_6 FA*GLAAQDGEA*SGRG My output: Extract all... (22 Replies)
Discussion started by: patrick87
22 Replies

5. Shell Programming and Scripting

Way to extract detail and its content above specific value problem asking

Input file: >position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344 MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA NRTS* >position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
Discussion started by: patrick87
7 Replies

6. Shell Programming and Scripting

Extract specific content from data and rename its header problem asking

Input file 1: >pattern_5 GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW >pattern_1 AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
Discussion started by: patrick87
10 Replies

7. Shell Programming and Scripting

Extract portion of log info based on specific word

Hi Gurus, I'm using HP-UX B.11.23 operating system. I've been trying to extract a specific wording for example: "A tool used by tp produced warnings" from my below log data, but could not find a way to solve it. My intention is, if the log contain the word: "A tool used by tp produced... (9 Replies)
Discussion started by: superHonda123
9 Replies

8. UNIX for Dummies Questions & Answers

How to print line starts with specific word and contains specific word using sed?

Hi, I have gone through may posts and dint find exact solution for my requirement. I have file which consists below data and same file have lot of other data. <MAPPING DESCRIPTION ='' ISVALID ='YES' NAME='m_TASK_UPDATE' OBJECTVERSION ='1'> <MAPPING DESCRIPTION ='' ISVALID ='NO'... (11 Replies)
Discussion started by: tmalik79
11 Replies

9. UNIX for Dummies Questions & Answers

Match columns and write specific word

Hi all I have another question as of now. I have two files One file contain data like this Serendipity glamerus Shenpurity In another file these entries are present in different columns like this from 2 column onwards SRN Serendipity Non serendipity ... (1 Reply)
Discussion started by: Priyanka Chopra
1 Replies

10. Shell Programming and Scripting

awk to match file1 and extract specific tag values

File2 is tab-delimeted and I am trying to use $2 in file1 (space delimeted) as a search term in file2. If it is found then the AF= in and the FDP= values from file2 are extracted and printed next to the file1 line. I commented the awk before I added the lines in bold the current output resulted. I... (7 Replies)
Discussion started by: cmccabe
7 Replies
ppmtosixel(1)						      General Commands Manual						     ppmtosixel(1)

NAME
ppmtosixel - convert a portable pixmap into DEC sixel format SYNOPSIS
ppmtosixel [-raw] [-margin] [ppmfile] DESCRIPTION
Reads a portable pixmap as input. Produces sixel commands (SIX) as output. The output is formatted for color printing, e.g. for a DEC LJ250 color inkjet printer. If RGB values from the PPM file do not have maxval=100, the RGB values are rescaled. A printer control header and a color assignment table begin the SIX file. Image data is written in a compressed format by default. A printer control footer ends the image file. OPTIONS
-raw If specified, each pixel will be explicitly described in the image file. If -raw is not specified, output will default to com- pressed format in which identical adjacent pixels are replaced by "repeat pixel" commands. A raw file is often an order of magni- tude larger than a compressed file and prints much slower. -margin If -margin is not specified, the image will be start at the left margin (of the window, paper, or whatever). If -margin is speci- fied, a 1.5 inch left margin will offset the image. PRINTING
Generally, sixel files must reach the printer unfiltered. Use the lpr -x option or cat filename > /dev/tty0?. BUGS
Upon rescaling, truncation of the least significant bits of RGB values may result in poor color conversion. If the original PPM maxval was greater than 100, rescaling also reduces the image depth. While the actual RGB values from the ppm file are more or less retained, the color palette of the LJ250 may not match the colors on your screen. This seems to be a printer limitation. SEE ALSO
ppm(5) AUTHOR
Copyright (C) 1991 by Rick Vinci. 26 April 1991 ppmtosixel(1)
All times are GMT -4. The time now is 10:02 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy