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Top Forums Shell Programming and Scripting compare files by numerical value Post 302366502 by s-layer on Thursday 29th of October 2009 05:25:41 PM
Old 10-29-2009
compare files by numerical value

Hi everyone,

I would love to have a script that does the following:

I have one file that looks like that:

Code:
ATOM      1  BB  SER 1   1     -31.958 -25.125 -11.061  1.00  0.00      
ATOM      3  BB  GLY 1   2     -32.079 -26.085 -14.466  1.00  0.00      
ATOM      4  BB  VAL 1   3     -36.455 -21.265 -15.792  1.00  0.00      
ATOM      6  BB  SER 1   4     -37.401 -20.877 -19.029  1.00  0.00     
ATOM      8  BB  ALA 1   5     -42.701 -21.232 -18.584  1.00  0.00     
ATOM     10  BB  VAL 1   6     -47.498 -23.718 -18.979  1.00  0.00

Then I have a second file that looks like that:

Code:
1
3
6

What I want to do is: In those lines of file1 where $6 has one of the values of file2, I add an additional column in file1 $12=="cg". The output should look like this:

Code:
ATOM      1  BB  SER 1   1     -31.958 -25.125 -11.061  1.00  0.00  cg   
ATOM      3  BB  GLY 1   2     -32.079 -26.085 -14.466  1.00  0.00      
ATOM      4  BB  VAL 1   3     -36.455 -21.265 -15.792  1.00  0.00  cg    
ATOM      6  BB  SER 1   4     -37.401 -20.877 -19.029  1.00  0.00     
ATOM      8  BB  ALA 1   5     -42.701 -21.232 -18.584  1.00  0.00     
ATOM     10  BB  VAL 1   6     -47.498 -23.718 -18.979  1.00  0.00  cg

Could anyone help me please? That would be great! Normally I am using awk or perl :-)

Thank you so much,
Christine

Last edited by vgersh99; 10-29-2009 at 06:49 PM.. Reason: code tags, please!
 

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XSetWMProtocols(3)						  XLIB FUNCTIONS						XSetWMProtocols(3)

NAME
XSetWMProtocols, XGetWMProtocols - set or read a window's WM_PROTOCOLS property SYNTAX
Status XSetWMProtocols(Display *display, Window w, Atom *protocols, int count); Status XGetWMProtocols(Display *display, Window w, Atom **protocols_return, int *count_return); ARGUMENTS
display Specifies the connection to the X server. count Specifies the number of protocols in the list. count_return Returns the number of protocols in the list. protocols Specifies the list of protocols. protocols_return Returns the list of protocols. DESCRIPTION
The XSetWMProtocols function replaces the WM_PROTOCOLS property on the specified window with the list of atoms specified by the protocols argument. If the property does not already exist, XSetWMProtocols sets the WM_PROTOCOLS property on the specified window to the list of atoms specified by the protocols argument. The property is stored with a type of ATOM and a format of 32. If it cannot intern the WM_PRO- TOCOLS atom, XSetWMProtocols returns a zero status. Otherwise, it returns a nonzero status. XSetWMProtocols can generate BadAlloc and BadWindow errors. The XGetWMProtocols function returns the list of atoms stored in the WM_PROTOCOLS property on the specified window. These atoms describe window manager protocols in which the owner of this window is willing to participate. If the property exists, is of type ATOM, is of for- mat 32, and the atom WM_PROTOCOLS can be interned, XGetWMProtocols sets the protocols_return argument to a list of atoms, sets the count_return argument to the number of elements in the list, and returns a nonzero status. Otherwise, it sets neither of the return argu- ments and returns a zero status. To release the list of atoms, use XFree. XGetWMProtocols can generate a BadWindow error. PROPERTIES
WM_PROTOCOLS List of atoms that identify the communications protocols between the client and window manager in which the client is willing to participate. DIAGNOSTICS
BadAlloc The server failed to allocate the requested resource or server memory. BadWindow A value for a Window argument does not name a defined Window. SEE ALSO
XAllocClassHint(3), XAllocIconSize(3), XAllocSizeHints(3), XAllocWMHints(3), XFree(3), XSetCommand(3), XSetTransientForHint(3), XSet- TextProperty(3), XSetWMClientMachine(3), XSetWMColormapWindows(3), XSetWMIconName(3), XSetWMName(3), XSetWMProperties(3), XStringListTo- TextProperty(3) Xlib - C Language X Interface X Version 11 libX11 1.3.2 XSetWMProtocols(3)
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