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UNIX for Dummies Questions & Answers
Need help in logic using awk command
Post 302351710 by senthil.ak on Wednesday 9th of September 2009 09:48:50 AM
09-09-2009
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Hello friends,
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Hello Friends,
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Hi Friends,
I got stuck where to start with ..
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I want to print lines that have "IND" or "ind" or nothing in field 2 or 3
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In one data file i have values like this
a b c 1 2
e f g 2 3
i j k 3 5
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Hi,
My file has 2 fields and millions of lines.
variableStep chrom=Uextra span=25
201 0.5952
226 0.330693
251 0.121004
276 0.0736858
301 0.0646982
326 0.0736858
401 0.2952
426 0.230693
451 0.221004
476 0.2736858
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Hi friends, I am having 2 files, I just want to compare 2 files each containing 2 columns 1st column is lat, and 2nd column is long, if anyone can understand below logic please help me in writing script with awk.. here each field of file2 needs to be compared with std_file
main
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Hi,
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DATA MASTER 1
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I am trying to check my logic on a long awk i'm using. I have about 30 checks that I built into an awk and I "believe" I did this right, but I could be wrong.
awk -F\| '
$9 !~ /\/*{1,}*/
$9 ~ /\(-{4}, {2,3}/
$9 ~ /\({6}, {2,3}\)/
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$9 ~... (8 Replies)
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LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1) NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...] re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...] re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]] re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...] DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per- forming STS and primer searches. OPTIONS
-p=hash-file Perform primer lookup using hash-file -P=hash-file Perform primer lookup using hash-file -s=hash-file Perform STS lookup using hash-file -S=hash-file Perform STS lookup using hash-file -n=mism Set max allowed mismatches per primer for lookup -g=gaps Set max allowed indels per primer for lookup -m=margin Set variability for STS size for lookup -l Use presize alignments (only if gaps>0) -G Print alignments in comments -d=min-max Set default STS size -r=+|- Enable/disable reverse STS lookup -O=+|- Enable/disable syscall optimisation -C=batchcnt Set number of STSes per batch -o=outfile Set output file name -q Quiet (no progress indicator) EXAMPLE
famap -tN -b genome.famap org/chr_*.fa fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200 See famap(1) and fahash(1) SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt bioperl(1), e-pcr(1), famap(1) and fahash(1) AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by the Free Software Foundation. On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL. April 2008 RE-PCR(1)