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Full Discussion: match range of different numbers by AWK
Top Forums Shell Programming and Scripting match range of different numbers by AWK Post 302349587 by repinementer on Wednesday 2nd of September 2009 04:36:40 AM
Old 09-02-2009
Can I do some thing like this. ???But I modifed according to my requirements.
Code:
#!/usr/bin/awk -f

BEGIN {
OFS="\t"; ORS="\n" 
  def["ascoutlower"]    = "ARANGE"   
  def["ascoutupper"]    = "BRANGE"
  def["descoutlower"]   = "CRANGE"
  def["descoutupper"]   = "DRANGE"
  def["ascinnotexact"]  = "ERANGE"
  def["descinnotexact"] = "FRANGE"
  def["ascinexact"]     = "GRANGE"
  def["descinexact"]    = "HRANGE"
  
  }
  
NR == FNR && NF {
  NF > 2 && k = $1
  in2[k] = in2[k] ? in2[k] RS $1 FS $2 : $2 FS $3
  next
  }
$1 in in2 {
  n = split(in2[$1], tmp, RS) 
  split(tmp[1], Tmp); min = Tmp[1]
  m = split(tmp[n], Tmp); max = Tmp[m]
  # asc - desc
  Def = $2 > $3 ? "desc" : "asc"
  # inrange - outofrange
  if (Def == "asc")
    Def = Def ($2 >= min && $3 <= max ? "in" : "out") 
  else
    Def = Def ($3 >= min && $2 <= max ? "in" : "out")
  # lower - upper
  if ((Def ~ /ascout/ ? $3 : $2) <= min) {
    Def = Def "lower"
    print $0 "\t" def[Def]
    next
    }
  if ((Def ~ /ascout/ ? $3 : $2) >= max) {
    Def = Def "upper"
    print $0 "\t" def[Def]
    next
    }    
  # exact - not exact
  for (i=1; i<=n; i++) {
    split(tmp[i], range)
    if (Def ~ /asc/) { k1 = $2; k2 = $3 }      
    else { k1 = $3; k2 = $2 }
    if (k1 >= range[1] && k2 <= range[2]) {
      Def = Def "exact"
      print $0 "\t" def[Def]
      next
      }
    }
      Def = Def "notexact"
    print $0 "\t" def[Def]
    next
    #Seperte plus and minus
    if (/ + /) {
	    sub(/ascoutlower/, "ascoutupper", Def)
     	sub(/ascoutupper/, "descoutupper", Def)
     	sub(/descoutupper/, "descoutlower", Def)
     	sub(/descoutlower/, "descoutupper", Def)
     	sub(/ascinnotexac/, "descinnotexac", Def)
     	sub(/descinnotexac/, "ascinnotexac", Def)
     	sub(/ascinexact/, "descinexact", Def)
     	sub(/descinexact/, "ascinexact", Def)
 	
	elseif(/ - /) 
	    sub(/ascoutlower/, "descoutupper", Def)
     	sub(/descoutupper/, "ascoutlower", Def)
     	sub(/ascoutupper/, "descoutlower", Def)
     	sub(/descoutlower/, "ascoutupper", Def)
     	sub(/ascinnotexact/, "descinnotexact", Def)
     	sub(/descinnotexact/, "ascinnotexact", Def)
     	sub(/ascinexact/, "descinexact", Def)
     	sub(/descinexact/, "ascinexact", Def)
  }  
 }!/^[ \t]/ { print $0 "\t","UNKNOWN" }



---------- Post updated 09-02-09 at 12:34 AM ---------- Previous update was 09-01-09 at 06:04 AM ----------

Hey Sorry for bothering.
I wrote another shell script to do the above job. Forget the above question.
I found a bug in your script
This bus is not producing any ranges for few lines!Do you know why??
For example


input1
Code:
A	239861347 239858777	-
B	233849110 233849388	+
C	202864284 202864396	+
D	187984662 187982263	-

input2
Code:
A	239858789 239865855	-
B	233849110 233849388	+
C	202864284 202864396	+
D	187984054 187984122	+
 	187984914 187984960
 	187985046 187985179
 	187985444 187985584
 	187986365 187986534
 	187986646 187986756
 	187986984 187987128
 	187987609 187987747
 	187987977 187988067
 	187988285 187988365
 	187989607 187990379



---------- Post updated at 12:36 AM ---------- Previous update was at 12:34 AM ----------

Just incase
The script I/ using
Code:
awk -f script.awk input2 input1

Code:
#!/usr/bin/awk -f

BEGIN {
OFS="\t"; ORS="\n" 
  def["ascoutlower"]    = "ARANGE"   
  def["ascoutupper"]    = "BRANGE"
  def["descoutlower"]   = "CRANGE"
  def["descoutupper"]   = "DRANGE"
  def["ascinnotexact"]  = "ERANGE"
  def["descinnotexact"] = "FRANGE"
  def["ascinexact"]     = "GRANGE"
  def["descinexact"]    = "HRANGE"
  
  }

NR == FNR && NF {
  NF > 2 && k = $1
  in2[k] = in2[k] ? in2[k] RS $1 FS $2 : $2 FS $3
  next
  }
$1 in in2 {
  n = split(in2[$1], tmp, RS) 
  split(tmp[1], Tmp); min = Tmp[1]
  m = split(tmp[n], Tmp); max = Tmp[m]
  # asc - desc
  Def = $2 > $3 ? "desc" : "asc"
  # inrange - outofrange
  if (Def == "asc")
    Def = Def ($2 >= min && $3 <= max ? "in" : "out") 
  else
    Def = Def ($3 >= min && $2 <= max ? "in" : "out")
  # lower - upper
  if ((Def ~ /ascout/ ? $3 : $2) <= min) {
    Def = Def "lower"
    print $0 "\t" def[Def]
    next
    }
  if ((Def ~ /ascout/ ? $3 : $2) >= max) {
    Def = Def "upper"
    print $0 "\t" def[Def]
    next
    }    
  # exact - not exact
  for (i=1; i<=n; i++) {
    split(tmp[i], range)
    if (Def ~ /asc/) { k1 = $2; k2 = $3 }      
    else { k1 = $3; k2 = $2 }
    if (k1 >= range[1] && k2 <= range[2]) {
      Def = Def "exact"
      print $0 "\t" def[Def]
      next
      }
    }
      Def = Def "notexact"
    print $0 "\t" def[Def]
    next    
}!/^[ \t]/ { print $0 "\tUNKNOWN" }

Last edited by repinementer; 09-01-2009 at 11:19 AM..
 

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