08-06-2008
Thanks.. I want to add one more thing..
Thanks Jean It solved the issue but I want to add one more thing in the output..
I want the output to be
>bi|2138271|geb|AAC15885.1|precursor [Sambucus nigra] ( Region from 92-110 of x)
LWPCGTQRNQQWTFYTDD
>bi|2138271|geb|AAC15885.1|precursor [Sambucus nigra] ( Region from 20-132 of x)
SVGIQGIDYPSVSFNLAGAKSATWDFLRMPHDLVGEDNKYNDGEPITGNIIGRDGLCVDVRNGYDTDGTP
LQLWPCGTQRNQQWTFYTDDTIRSMGKCMTANGLSNGSNIMI
where x is the total alphabets of that record in FILE1 from where we have extracted the substring. And this x do not include the Header line(the one starting with '>')
Although I have changed the line -
printf("%s (%s-%s)\n", Header,"Region from " From[k,i], To[k,i]);
this has solved half of my problem but still I am not able to include the Total length.
Please help.
Last edited by smriti_shridhar; 08-06-2008 at 01:49 AM..
Reason: formating
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LEARN ABOUT FREEBSD
atf-sh
ATF-SH(1) BSD General Commands Manual ATF-SH(1)
NAME
atf-sh [-s shell] -- interpreter for shell-based test programs
SYNOPSIS
atf-sh script
DESCRIPTION
atf-sh is an interpreter that runs the test program given in script after loading the atf-sh(3) library.
atf-sh is not a real interpreter though: it is just a wrapper around the system-wide shell defined by ATF_SHELL. atf-sh executes the inter-
preter, loads the atf-sh(3) library and then runs the script. You must consider atf-sh to be a POSIX shell by default and thus should not
use any non-standard extensions.
The following options are available:
-s shell Specifies the shell to use instead of the value provided by ATF_SHELL.
ENVIRONMENT
ATF_LIBEXECDIR Overrides the builtin directory where atf-sh is located. Should not be overridden other than for testing purposes.
ATF_PKGDATADIR Overrides the builtin directory where libatf-sh.subr is located. Should not be overridden other than for testing purposes.
ATF_SHELL Path to the system shell to be used in the generated scripts. Scripts must not rely on this variable being set to select a
specific interpreter.
EXAMPLES
Scripts using atf-sh(3) should start with:
#! /usr/bin/env atf-sh
Alternatively, if you want to explicitly choose a shell interpreter, you cannot rely on env(1) to find atf-sh. Instead, you have to hardcode
the path to atf-sh in the script and then use the -s option afterwards as a single parameter:
#! /path/to/bin/atf-sh -s/bin/bash
ENVIRONMENT
ATF_SHELL Path to the system shell to be used in the generated scripts.
SEE ALSO
atf-sh(3)
BSD
September 27, 2014 BSD