Extract Pattern Sequence Post: 302150148

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Hi I want to be able to extract a sequence of n lines from a file. ideas, commands and suggestions would be highly appreciated. Thanks

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pattern extract

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Hi, I want to match the sequence id (sub-string of line starting with '>' and extract the information upto next '>' line ). Please help . input > fefrwefrwef X900 AGAGGGAATTGG AGGGGCCTGGAG GGTTCTCTTC > fefrwefrwef X932 AGAGGGAATTGG AGGAGGTGGAG GGTTCTCTTC > fefrwefrwef X937...

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Extract whole word preceding a specific character pattern with first occurence of the pattern

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How to find a specific sequence pattern in a fasta file?

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pod::pom::view::html

Pod::POM::View::HTML(3) 				User Contributed Perl Documentation				   Pod::POM::View::HTML(3)

NAME

       Pod::POM::View::HTML

DESCRIPTION

       HTML view of a Pod Object Model.

METHODS

       "view($self, $type, $item)"
       "view_pod($self, $pod)"
       "view_head1($self, $head1)"
       "view_head2($self, $head2)"
       "view_head3($self, $head3)"
       "view_head4($self, $head4)"
       "view_over($self, $over)"
       "view_item($self, $item)"
       "view_for($self, $for)"
       "view_begin($self, $begin)"
       "view_textblock($self, $textblock)"
       "view_verbatim($self, $verbatim)"
       "view_meta($self, $meta)"
       "view_seq_bold($self, $text)"
	   Returns the text of a "B<>" sequence enclosed in a "<b<>" element.

       "view_seq_italic($self, $text)"
	   Returns the text of a "I<>" sequence enclosed in a "<i<>" element.

       "view_seq_code($self, $text)"
	   Returns the text of a "C<>" sequence enclosed in a "<code<>" element.

       "view_seq_file($self, $text)"
       "view_seq_entity($self, $text)"
       "view_seq_index($self, $text)"
	   Returns an empty string.  Index sequences are suppressed in HTML view.

       "view_seq_link($self, $text)"

AUTHOR

       Andy Wardley <abw@kfs.org>

COPYRIGHT AND LICENSE

       Copyright (C) 2000 Andy Wardley.  All Rights Reserved.

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.12.1							    2009-03-19						   Pod::POM::View::HTML(3)

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

How to extract a sequence of n lines from a file

Discussion started by: 0ktalmagik

2. Shell Programming and Scripting

pattern extract

Discussion started by: priyam

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Extract sequence blocks

Discussion started by: solli

4. Shell Programming and Scripting

sed: Find start of pattern and extract text to end of line, including the pattern

Discussion started by: TestTomas