I have a requirement to transpose the below xml which is in a text file on unix:
<?xml version="1.0" ?>
<REQUEST>
<ID>XXX</ID>
<TIMESTAMP>20090720062610</TIMESTAMP>
<FLAG>Y</FLAG>
<TO_FLAG>Y</TO_FLAG>
</REQUEST>
to
<?xml version="1.0"... (13 Replies)
Hi ALL
I have one input file say FILE1 which looks as below.
a=1
b=2
c=3
a=4
b=5
c=6
.
.
.
Here a,b,c...etc are variable names.
The output file(FILE2) should look like
1,2,3
4,5,6
.....
..... (5 Replies)
Hello,
Can anyone advise me what command I could use to display the results of the following command
ATOM 1 ca 2 o 3 h 4 h 5 o
dE/dx 0.2057422D-01 0.2463722D-01-0.1068047D-01-0.1495280D-01-0.3725362D-02
dE/dy -0.7179106D-02-0.1554542D-01 0.1016889D-01 0.3268502D-02-0.4888578D-01
dE/dz... (3 Replies)
TRANSPOSE
--------------------------------------------------------------------------------
i have a file with recurring fields
Start
A 1
B 2
C 3
D 4
E 5
End
Start
A 11
B 12
C 23
D 25
E 21 (1 Reply)
Dear All
I was wondering how to resolve an issue that I met during my analysis. In particular I have a file like this(tab separated):
factor1 element1 chr1 309343146 330945480 1 protein_coding geneA
factor2 element2 chr2 309350853 309603230 1 protein_coding geneA
factor3 element3 chr3... (2 Replies)
Hi all,
need a help with getting a one line command to do the following.
i have an input file with rows of data containing credits for each office, the output should be one row for each office with all the credits in rows for that office, if its not there then it should say N/A. the credits are... (10 Replies)
Discussion started by: tech_frk
10 Replies
LEARN ABOUT DEBIAN
seqsplit
SEQSPLIT(1) General Commands Manual SEQSPLIT(1)NAME
seqsplit - split seqs into chunks of defined size and overlap
SYNOPSIS
seqsplit [-options] <seqfile>
DESCRIPTION
This manual page documents briefly the seqsplit command.
seqsplit is a program that splits sequences into smaller chunks of defined size and overlap; output a FASTA file.
OPTIONS -h Help; display usage and version.
-o <file>
Output the new FASTA file to <file>.
--fragfile <f>
Save one-line-per-frag coord summary file to <f>.
--informat <s>
Specify sequence file format <s>.
--length <n>
Set max length of each unique seq frag to <n>.
--overlap <n>
Set overlap length to <n> (total frag size = length+overlap).
--shortnames
Use short "frag1" names, not "<src>/<from>-<to>".
LIMITATIONS
Still working in 32 bits -- no sequence can be more than 2 GB in size.
SEE ALSO afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), stranslate(1),
weight(1).
AUTHOR
Sean Eddy
HHMI/Department of Genetics
Washington University School of Medicine
4444 Forest Park Blvd., Box 8510
St Louis, MO 63108 USA
Phone: 1-314-362-7666
FAX : 1-314-362-2157
Email: eddy@genetics.wustl.edu
This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>,
for the Debian project (but may be used by others).
Mon, 01 Aug 2005 15:28:08 -0300SEQSPLIT(1)