10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
i have a file with multiple entries. After some tests with sed i managed to get the file output as follows:
lsn=X-LINK-IN0,apc=661:0,state=avail,avail/links=1/1,
00,2110597,2094790,0,81,529,75649011,56435363,
lsn=TM1ITP1-AM1ITP1-LS,apc=500:0,state=avail,avail/links=1/1,... (5 Replies)
Discussion started by: nms
5 Replies
2. Shell Programming and Scripting
Hi,
I have an XML file and I am tring to extract some data form it, after lot of data cleaning process, I ended up with an issue, and need your urgent support.
my current input data in below format:
<Node>xxxxxx
<Node>yyyyy</Node>
<Node>zzzzzz
<Node>12345</node>
I need... (9 Replies)
Discussion started by: rramkrishnas
9 Replies
3. UNIX for Dummies Questions & Answers
awk 'BEGIN{FS = "Ç"}
NR == 1 {p = $0; next}
NF > 1 {print p; p = $0}
NF <= 1 {p = (p " " $0)}
END {print p}' input.txt > output.txt
This is what the input data file looks like with broken lines
Code:
29863 Ç890000000 Ç543209911 ÇCHNGOHG
Ç000000001 Ç055 ... (4 Replies)
Discussion started by: cumeh1624
4 Replies
4. Shell Programming and Scripting
After I create printer queues in AIX, I have to append a filter file location within that printers custom file. within lets say test_queue.txt I need to find the row that starts with :699 and then I need to append on the end the string /usr/local/bin/k_portrait.sh.
Now I've gotten the sed... (2 Replies)
Discussion started by: peachclift
2 Replies
5. Shell Programming and Scripting
Hi,
I need help for below scenario.I have a flat file which is having records seperated by delimiters which will represent each record for oracle table.My Control file will consider each line as one record for that table. Some of the lines are aligned in two/three lines so that records are... (4 Replies)
Discussion started by: kannansr621
4 Replies
6. Shell Programming and Scripting
Hi,
I have gps receiver log..its giving readings .like below
Trying 127.0.0.1...
Connected to localhost.
Escape character is '^]'.
GPSD,R=1
$GPGSV,3,1,11,08,16,328,40,11,36,127,00,28,33,283,39,20,11,165,00*71... (3 Replies)
Discussion started by: gudivada213
3 Replies
7. Shell Programming and Scripting
Hi all,
Please help me in providing sample code to append the following 4 lines in one row.
Input :
A1/EXT "BAPBSC10/07B/00" 523 090530 0115
RXOCF-430 HY1711 1
EXTERNAL ALARM
DOOR ALARM
Output should be :
A1/EXT "BAPBSC10/07B/00" 523 090530 0115 ... (8 Replies)
Discussion started by: sudhakaryadav
8 Replies
8. Shell Programming and Scripting
Hi All,
I have a file which contains data as below
When we see no pipe character in the line. append those lines to the previous line with pipe character till we get the next line with pipe character with ~(concat with ~)
Input file looks like:
1080530944|001|john.l.bonner|Acknowledge|CN... (11 Replies)
Discussion started by: ainuddin
11 Replies
9. Shell Programming and Scripting
Hi I have used many times the various methods to append two lines together in a file.
This time I want to append the 1st line to the second and repeat for the complete file.... an example
This is the file
owns the big brown dog
joe
owns the small black dog
jim
What I want is
... (7 Replies)
Discussion started by: dwalley
7 Replies
10. UNIX Desktop Questions & Answers
Suppose i have a file "xyz.txt" which contains
abcdef
ghijklm
nop
Now in want to add "qrst" to the last line such that the file becomes
abcdef
ghijklm
nopqrst
P.S:The o/p i need is
abcdef
ghijklm
nopqrst (and not) nop
qrst (5 Replies)
Discussion started by: subhrap.das
5 Replies
Bio::UpdateableSeqI(3pm) User Contributed Perl Documentation Bio::UpdateableSeqI(3pm)
NAME
Bio::UpdateableSeqI - Descendant of Bio::SeqI that allows updates
SYNOPSIS
See Bio::SeqI for most of the documentation. See the documentation of the methods for further details.
DESCRIPTION
Bio::UpdateableSeqI is an interface for Sequence objects which are expected to allow users to perform basic editing functions
(update/delete) on their component SeqFeatures.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - David Block
Email dblock@gene.pbi.nrc.ca
CONTRIBUTORS
Ewan Birney forced me to this...
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
delete_feature
Title : delete_feature
Usage : my $orphanlist=$self->delete_feature($feature,$transcript,$gene);
Function: deletes the specified $feature from the given transcript, if $transcript is sent and exists and $feature is a feature of $transcript,
or from $gene if the $feature is a feature of $gene, or from $self if $transcript and $gene are not sent. Keeps track of the features
of the $gene object that may be left as orphans and returns them as a listref.
Example : I want to delete transcript 'abc' of gene 'def', with three exons, leaving only transcript 'ghi' with two exons.
This will leave exons 1 and 3 part of 'ghi', but exon 2 will become an orphan.
my $orphanlist=$seq->delete_feature($transcript{'abc'},undef,$gene{'def'});
$orphanlist is a reference to a list containing $exon{'2'};
Returns : a listref of orphaned features after the deletion of $feature (optional)
Args : $feature - the feature to be deleted
$transcript - the transcript containing the $feature, so that a $feature can be removed from only one transcript when there are multiple
transcripts in a gene.
$gene - the gene containing the $transcript and/or the $feature
perl v5.14.2 2012-03-02 Bio::UpdateableSeqI(3pm)