10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have this fastq file:
@M04961:22:000000000-B5VGJ:1:1101:9280:7106 1:N:0:86
GGGGGGGGGGGGCATGAAAACATACAAACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTTATCAATACCATGAAAAATATCAACCACACCA
+test-1
GGGGGGGGGGGGGGGGGCCGGGGGFF,EDFFGEDFG,@DGGCGGEGGG7DCGGGF68CGFFFGGGG@CGDGFFDFEFEFF:30CGAFFDFEFF8CAF;;8... (10 Replies)
Discussion started by: Xterra
10 Replies
2. Shell Programming and Scripting
Need to count consecutive characters in a string and give the output as below
i/p=aaaabbcaa
o/p=a4b2c1a2 (10 Replies)
Discussion started by: prasanna2166
10 Replies
3. Shell Programming and Scripting
I have a large dataset with following structure;
C 0001 Carbon
D SAR001 methane
D SAR002 ethane
D SAR003 propane
D SAR004 butane
D SAR005 pentane
C 0002 Hydrogen
C 0003 Nitrogen
C 0004 Oxygen
D SAR011 ozone
D SAR012 super oxide
C 0005 Sulphur
D SAR013... (3 Replies)
Discussion started by: Syeda Sumayya
3 Replies
4. Shell Programming and Scripting
Hi All!
I would like to solve a problem but I have no clue of how do it!I will be grateful if someone could help me!
I have a file like this:
> genes | transcript
...sequence....
>ENSMUSG00000006638|ENSMUST00000006814
GGGAAATGGAATACCCCTACACAACCAAGATGCTGAGTTCCTCCCTGAGCCCGCAAAACG... (2 Replies)
Discussion started by: giuliangiuseppe
2 Replies
5. UNIX for Dummies Questions & Answers
Hi everyone, and thanks after all
I'm a biologist and i have to extract information from one text. The text is something like this
1023 A A 56 0 cc...,,,,..gg..Cc.c,,c..CC..,,
1024 T T 86 0 ..,,,..aaAA..,,aAA,,a,,A,,a
1025 G G 125 0 ... (5 Replies)
Discussion started by: beajorrin
5 Replies
6. Shell Programming and Scripting
Hi i have data like
abchd 124 ldskc aattggcc
each separated by tab space i want to count number of characters in 4th column and print it in new column with tabspace for every line can anyone help me how to do it.
Thanks. (3 Replies)
Discussion started by: bhargavpbk88
3 Replies
7. Shell Programming and Scripting
I have a file that I need to count the number of "Y"s in the file, but just the "Y"s that fall between certain columns. Like:
file1:
1234567890123456789012345
BBBBBBYBBBBYBBYBBYBBYBBB
I want to count the 'Y's between 17 and 21 = 2 "Y"s
Thanks (12 Replies)
Discussion started by: jbt828
12 Replies
8. Programming
i have a string "dfasdfasdfadf"
i want to count the number of times each character is repeated..
For instance, d is repeated 4 times, f is repeated 4 times..
can u give a program in c (1 Reply)
Discussion started by: pgmfourms
1 Replies
9. Shell Programming and Scripting
Hello, Member or professional
need help how to count characters by line of file
Example of the file is here
cdr20080817164322811681txt
cdr20080817164322811txt
cdr20080817164322811683txt
cdr20080817164322811684txt
I want to count the characters by line of file . The output that I... (4 Replies)
Discussion started by: ooilinlove
4 Replies
10. UNIX for Dummies Questions & Answers
Hi all,
I am logging any access to a server, and i wanted to write a script which tells me how much entries there are.
The Problem is that
"wc -l log"
outputs the correct number of lines but with the name of the file attached.
is there any nice possibility to solve this that i ONLY... (3 Replies)
Discussion started by: JP_II
3 Replies