10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
I have one file with one column and several hundred entries
File1:
NA1
NA2
NA3And now I need to run a command within a mapping aligner tool to insert these sample names into a sequence alignment file (SAM) such that they look like this
@RG ID:Library1 SM:NA1 PL:Illumina ... (7 Replies)
Discussion started by: nans
7 Replies
2. Shell Programming and Scripting
Hi,
I want to search only duplicate sequence number in file e.g
4757610
4757610
should display only duplicate sequence number in file.
file contain is:
4757610 6zE:EXPNL ORDER_PRIORITY='30600022004757610' ORDER_IDENTIFIER='4257771056' MM_ASK_VOLUME='273' MM_ASK_PRICE='1033.0000' m='GBX'... (5 Replies)
Discussion started by: ashfaque
5 Replies
3. Shell Programming and Scripting
Hi,
I have a file which contains few columns and the first column has the file names, and I would like to identify the missing file sequence number form the file and would copy to another file. My files has data in below format.
APKRISPSIN320131231201319_0983,1,54,125,... (5 Replies)
Discussion started by: rramkrishnas
5 Replies
4. Shell Programming and Scripting
Hi guys,
Does anyone know how to get a string of sequence from other file? Should I use awk? Please see below. Thanks!
LIST_FILE:
>NAME1
>NAME3
>NAME5
>NAME7
>NAME8
SEQ_FILE:
>NAME1 LEN75
100100101001010001010
>NAME2 LEN90
111010101010101101101
>NAME3 LEN27
101000101001010010101... (5 Replies)
Discussion started by: narachaid
5 Replies
5. Shell Programming and Scripting
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies
6. Shell Programming and Scripting
Hi.. I have a seperate chromosome sequences and i wanted to parse some regions of chromosome based on start site and end site.. how can i achieve this?
For Example Chr 1 is in following format
I need regions from 2 - 10 should give me AATTCCAAA
and in a similar way 15- 25 should give... (8 Replies)
Discussion started by: empyrean
8 Replies
7. Shell Programming and Scripting
How do I add the sequence number to the file? I have a file seperated by commas.
appusage,243,jsdgh,798
appusage,876,0989,900
.
.
appusage,82374,ajfgdh,9284
The output would be as below
1,appusage,243,jsdgh,798
2,appusage,876,0989,900
.
.
100,appusage,876,0989,900 (5 Replies)
Discussion started by: smee
5 Replies
8. Shell Programming and Scripting
have this shl that will FTP a file from the a directory in windows to UNIX, It get the name of the file stored in this variable $UpLoadFileName then put in the local directory LocalDir="${MPATH}/xxxxx/dat_files" that part seems to be working, but then I need to take that file and rename, I am using... (3 Replies)
Discussion started by: rechever
3 Replies
9. Shell Programming and Scripting
Hey guys,
I have this file generated by me... i want to create some HTML output from it.
The problem is that i am really confused about how do I go about reading the file.
The file is in the following format:
TID1 Name1 ATime=xx AResult=yyy AExpected=yyy BTime=xx BResult=yyy... (8 Replies)
Discussion started by: umar.shaikh
8 Replies
10. Shell Programming and Scripting
I have a pipe delimited file I need to add a sequence number to in the third field. The record fields will be variable length, so I have to parse for the second pipe. Another requirement is that the sequence number must be unique to all records in the file and subsequent files created, so the... (5 Replies)
Discussion started by: MrPeabody
5 Replies