10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Input File:
2000 3
1998 2
1997 2
1994 1
1991 1
1989 1
1987 2
1986 2
1985 1
1984 1
.
.
10 277256
9 278274
8 282507
7 284837
6 287066
5 292967 (4 Replies)
Discussion started by: perl_beginner
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2. Red Hat
In my Linux system ephemeral port range is showing different ranges as follows
$ cat /proc/sys/net/ipv4/ip_local_port_range
32768 61000
cat /etc/sysctl.conf | grep net.ipv4.ip_local_port_range
net.ipv4.ip_local_port_range = 9000 65500
Which will be the effective ephemeral port... (5 Replies)
Discussion started by: steephen
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3. Shell Programming and Scripting
I have files being generated in format A20140326.00........ to A20140326.24.............
I need to copy these hourly basis from one location to another.
Eg. If i copy from 14 to 19 the hour, I use wildcard as A201403226.1*.
Requirement is : I need to copy from 06 hour and wil run the script... (1 Reply)
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4. UNIX for Dummies Questions & Answers
Hi. I have a large data file. the first column has unique identifiers. I have approximately 5 of these files and they have varying number of columns in their rows. I need to extract ~300 of the rows in to a separate file. I'm not looking for something that would do all 5 files at once, but... (7 Replies)
Discussion started by: kadm
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5. Shell Programming and Scripting
hi all,
Say i have a range like 0 - 1000 and i need to split into diffrent files the lines which are within a specific fixed sub-range. I can achieve this manually but is not scalable if the range increase.
E.g
cat file1.txt
Response time 2 ms
Response time 15 ms
Response time 101... (12 Replies)
Discussion started by: varu0612
12 Replies
6. Shell Programming and Scripting
The following is part of a larger project and sed is (right now) a given. I am working on a recursive Korn shell function to "peel off" XML tags from a larger text. Just for context i will show the complete function (not working right now) here:
function pGetXML
{
typeset chTag="$1"
typeset... (5 Replies)
Discussion started by: bakunin
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7. UNIX for Dummies Questions & Answers
Dear all,
I have a file lik below: n of row=420, n of letters in each row=100000 like below: there is no space between the letters.
what I want is: the 75000th letter to the 85000th letter in each row.
how to do that? thanks a lot!
... (2 Replies)
Discussion started by: forevertl
2 Replies
8. Shell Programming and Scripting
Hi;
For sure there's an easy answer to this one that I am not finding..
I first set a variable, say
b1a:] max=5
then I want to use max to set the range for a for loop like so (it should run for i in 1:5)
b1a:] for i in {1..$max}; do echo $i; done
{1..5}
I would like the output... (2 Replies)
Discussion started by: jbr950
2 Replies
9. UNIX for Dummies Questions & Answers
Hello everyone. I'm new to the boards, I hope I can get and possibly give some help through these forums.
I need some help.
I have two CSV files, let's call them File A and File B.
This is the structure for File A:
ID, VAR1, VAR2, VAR3 - VAR50 (where the VAR 1-VAR50 are either 0 or 1)
... (1 Reply)
Discussion started by: JWill
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10. Shell Programming and Scripting
I want to print between the range two patterns if a particular pattern is present in between the two patterns. I am new to Unix. Any help would be greatly appreciated.
e.g.
Pattern1
Bombay
Calcutta
Delhi
Pattern2
Pattern1
Patna
Madras
Gwalior
Delhi
Pattern2
Pattern1... (2 Replies)
Discussion started by: joyan321
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GO-FILTER-SUBSET(1p) User Contributed Perl Documentation GO-FILTER-SUBSET(1p)
NAME
go-filter-subset.pl - extracts a subgraph from an ontology file
SYNOPSIS
go-filter-subset.pl -id GO:0003767 go.obo
go-filter-subset.pl -id GO:0003767 -to png go.obo | xv -
go-filter-subset.pl -filter_code 'sub{shift->name =~ /transcr/}' go.obo
DESCRIPTION
Exports a subset of an ontology from a file. The subset can be based on a specified set of IDs, a preset "subset" filter in the ontology
file (eg a GO "slim" or subset), or a user-defined filter.
The subset can be exported in any format, including a graphical image
ARGUMENTS
-id ID
ID to use as leaf node in subgraph. All ancestors of this ID are included in the exported graph (unless -partial is set)
Multiple IDs can be passed
-id ID1 -id ID2 -id ID3 ....etc
-subset SUBSET_ID
Extracts a named subset from the ontology file. (only works with obo format files). For example, a specific GO slim
ONLY terms belonging to the subset are exported - the -partial option is automatically set
-namespace NAMESPACE
only terms in this namespace
-filter_code SUBROUTINE
advanced option
A subroutine with which the GO::Model::Term object is tested for inclusion in the subgraph (all ancestors are automatically included)
You should have an understanding of the go-perl object model before using this option
Example:
go-filter-subset -filter_code 'sub {shift->namespace eq 'molecular_function'}' go.obo
(the same things can be achieved with the -namespace option)
-partial
If this is set, then only terms that match the user query are included. Parentage is set to the next recursive parent node in the
filter
For example, with the -subset option: if X and Y belong to the subset, and Z does not, and X is_a Z is_a Y, then the exported graph
withh have X is_a Y
-use_cache
If this switch is specified, then caching mode is turned on.
With caching mode, the first time you parse a file, then an additional file will be exported in a special format that is fast to parse.
This file will have the same filename as the original file, except it will have the ".cache" suffix.
The next time you parse the file, this program will automatically check for the existence of the ".cache" file. If it exists, and is
more recent than the file you specified, this is parsed instead. If it does not exist, it is rebuilt.
DOCUMENTATION
<http://www.godatabase.org/dev>
perl v5.14.2 2010-05-12 GO-FILTER-SUBSET(1p)
