10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hey guys,
I have wrote the following script to apply a module named "trinity" on my files. (it takes two input files and spit a trinity.fasta as output)
#!/bin/bash -l
#SBATCH -p node
#SBATCH -A <projectID>
#SBATCH -n 16
#SBATCH -t 7-00:00:00
#SBATCH --mem=128GB
#SBATCH --mail-type=ALL... (1 Reply)
Discussion started by: @man
1 Replies
2. UNIX for Dummies Questions & Answers
Hi
I think this should be relatively simple but I can't figure it out. I have several files with the same name in different folders within a directory (the output of a program that I ran). Something like this:
./myAnalysis/item1/round1/myoutput.txt
./myAnalysis/item1/round2/myoutput.txt... (2 Replies)
Discussion started by: jullee
2 Replies
3. Shell Programming and Scripting
Hi all,
I have a many folders with zipped files in them. The zipped files are txt files from different folders. The txt files have the same names. If i try to
find . -type f -name "*.zip" -exec cp -R {} /myhome/ZIP \; it fails since the ZIP files from different folders have the same names and... (2 Replies)
Discussion started by: pmkenya
2 Replies
4. UNIX for Dummies Questions & Answers
Hi all,
I am newbie and Im trying to rename a set of files & there are over 2900 of them. So, the best way I thought was through a script and here is what I got & it doesnt work.
Im not sure as how to figure this out.
Thanks
Gonzalez
Here is what I have -
-a:~/Users/GonzaPue/ls -altr... (3 Replies)
Discussion started by: PG3
3 Replies
5. UNIX for Dummies Questions & Answers
I have various .sh and .pl files in one directory. I want to rename all the .sh files to .pl
i.e testscript.sh --> testscript.pl
I am trying to use mv *.sh *.pl
It doesnt work though!! (3 Replies)
Discussion started by: chrisjones
3 Replies
6. Shell Programming and Scripting
Hi,
I have many files ex: file1, file2 ...file100, and I would like to rename only files with "1" in name. I don't have experience with bash and other shells. I know I can use "for i in" and "if", and I can use "sed" to change "1" but I have no idea how should "if" look.
I will be grateful... (6 Replies)
Discussion started by: Physix
6 Replies
7. Shell Programming and Scripting
Hi,
I'm not very experienced in shell scripting and that's probably why I came across the following problem:
I do have several hundred pairs of text files (PF00x.spl and PF00x.shd) where the first file (PF00x.spl) needs to be renamed according a string that is included in the second file... (12 Replies)
Discussion started by: inCH
12 Replies
8. Shell Programming and Scripting
Hi, I wanna rename bunch of files which has ":" to -.
ie. rename file named file1:file1 to file1-file1.
any ideas? (2 Replies)
Discussion started by: linuxaddict7
2 Replies
9. Shell Programming and Scripting
Hello, I've a list of file like this
img_001
img_22
img_44
and I would rename all with this form
photo_0001
photo_0002
photo_0003
photo_0004
suggestions?Thanks to all. (2 Replies)
Discussion started by: cv313x
2 Replies
10. UNIX for Dummies Questions & Answers
:confused: How can i rename a file 'x.log' to 'x_20020512 072909.log'
:eek: i'm using perl, with system command from a unix web server, and need to timestamp my logs if the above format (filename _ year month day hr min sec .log) (9 Replies)
Discussion started by: CompuTelSystem
9 Replies