10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hi,
Below are the sample files. x.txt is from an Excel file that is a list of users from Windows and y.txt is a list of database account.
$ head -500 x.txt y.txt
==> x.txt <==
TEST01 APP_USER_PROFILE
USER03 APP_USER_PROFILE
TEST02 APP_USER_EXP_PROFILE
TEST04 APP_USER_PROFILE
USER01 ... (3 Replies)
Discussion started by: newbie_01
3 Replies
2. Shell Programming and Scripting
I have a file of ~500,000 entries in the following:
file.txt
chr1 11868 12227 ENSG00000223972.5 . + HAVANA exon . gene_id "ENSG00000223972.5"; transcript_id "ENST00000456328.2"; gene_type "transcribed_unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type... (17 Replies)
Discussion started by: cmccabe
17 Replies
3. Shell Programming and Scripting
The below awk parser works for most data inputs, but I am having trouble with the last one. The problem is in the below rules steps 1 and 2 come from $2 (NC_000013.10:g.20763686_20763687delinsA) and steps 3 and 4 come from $1 (NM_004004.5:c.34_35delGGinsT).
Parse Rules:
The header is... (0 Replies)
Discussion started by: cmccabe
0 Replies
4. UNIX for Advanced & Expert Users
I have a file. We can call file1. It has these contents.
STOPLOSS Control_file 0000000010.000 STOPLOSS Audit_file_Signoff +0000000010.00
nawk '{ fmt="%3s %15s %15s %15s %21s\n";
if ($3==$6) {
tpy="Successful Match"; jnme=$1;... (4 Replies)
Discussion started by: wawa
4 Replies
5. Shell Programming and Scripting
I have two files
File 1 in reading directory is of following format
Read 1 A T
Read 3 T C
Read 5 G T
Read 7 A G
Read 10 A G
Read 12 C G
File 2 in directory contains
Read 5 A G
Read 6 T C
Read 7 G A
Read 8 G A
Read 20 A T
File2 contains (1 Reply)
Discussion started by: empyrean
1 Replies
6. Shell Programming and Scripting
Hi Folks,
I have a file with 22 columns. In which, I need to remove nulls if found at $2, $4, $14 & $16. Then, needs to compare the fields such as $2 == $14 && $4 == $16. The final output will print all the fields where the above conditions are satisfied.
Could you please anyone help me... (6 Replies)
Discussion started by: Jerald
6 Replies
7. Shell Programming and Scripting
Hi,
I want to split/parse certain bits of the hex data into another field.
Example:
Input data is
Word1: 4f72abfd
Output:
Parse bits (5 to 0) into field word1data1=0x00cd=205 decimal
Parse bits (7 to 6) into field word1data2=0x000c=12 decimal
etc.
Word2: efff3d02
Parse bits (13 to... (1 Reply)
Discussion started by: morrbie
1 Replies
8. Shell Programming and Scripting
#!/bin/bash
i=0
cat 1.csv | while read fileline
do
echo "$fileline"
IFS="#" flds=( $fileline )
nrofflds=${#flds}
echo "noof fields$nrofflds"
fld=0
while
do
echo "noof counter$fld"
echo "$nrofflds"
#fld1="${flds}" trying to store the content of line to fields but i... (4 Replies)
Discussion started by: barani75
4 Replies
9. Shell Programming and Scripting
I have a file name version.properties with the following data:
major.version=14
minor.version=234
I'm trying to write a grep expression to only put "14" to stdout. The following is not working.
grep "major.version=(+)" version.properties
What am I doing wrong? (6 Replies)
Discussion started by: obfunkhouser
6 Replies
10. Shell Programming and Scripting
Need a script that manipulates a fixed length file that will compare 2 fields in that file and if they are equal write that line to a new file.
i.e. If fields 87-93 = fields 119-125, then write the entire line to a new file. Do this for every line in the file. After we get only the fields... (1 Reply)
Discussion started by: Muga801
1 Replies