10 More Discussions You Might Find Interesting
1. Programming
Hello,
Trying to parse a file (in FASTA format) and reformat it.
1) Each record starts with ">" and followed by words separated by space, but they are in one same line for sure;
2) Sequences are following that may be in multiple rows with possible spaces inside until the next ">".... (18 Replies)
Discussion started by: yifangt
18 Replies
2. Programming
I have a String class with a function that reads tokens using a delimiter.
For example
String sss = "6:8:12:16";
nfb = sss.nfields_b (':');
String tkb1 = sss.get_token_b (':');
String tkb2 = sss.get_token_b (':');
String tkb3 = sss.get_token_b (':');
String tkb4 =... (1 Reply)
Discussion started by: kristinu
1 Replies
3. Shell Programming and Scripting
Hi All,
Im writing a shell script in which I want to get the folder names in one folder to be used in for loop.
I have used:
packsName=$(cd ~/packs/Acquisitions; ls -l| awk '{print $9}')
echo $packsName
o/p: opt temp user1 user2
ie. Im getting the output as a string.
But I want... (3 Replies)
Discussion started by: AB10
3 Replies
4. Shell Programming and Scripting
Hey everyone, i needed some help with this one. We move into a new file system (which should be the same as the previous one, other than the name directory has changed) and the script worked fine in the old file system and not the new. I'm trying to add the results from one with another but i'm... (4 Replies)
Discussion started by: senormarquez
4 Replies
5. Shell Programming and Scripting
Hi all,
I have a variable with value
DateFileFormat=NAME.CODE.CON.01.#.S001.V1.D$.hent.txt
I want this variable to get replaced with :
var2 is a variable with string value
DateFileFormat=NAME\\.CODE\\.CON\\.01\\.var2\\.S001\\.V1\\.D+\\.hent\\.txt\\.xml$
Please Help (3 Replies)
Discussion started by: abhinav192
3 Replies
6. Shell Programming and Scripting
Hi everyone.
I am trying to develop my own shell,and i am in the part of redirection.
let's say the user gives as input
cat test > test2
in the array of arguments i want to keep only arg=cat,arg=test.
">" token is not an input file so cat cannot worka and test2 is output.how can i remove > and... (1 Reply)
Discussion started by: bashuser2
1 Replies
7. Shell Programming and Scripting
i store the output of ls in a variable FL
$FL=`ls`
$echo $FL
f1.txt f2.txt f3.txt f4.txt f5.txt script.sh script.sh~ test.txt
now if i want to retrive the sub-string "f1.txt" from $FL we were taught that this is what i have to do
$set $FL
$echo $1
f1.txt
and echo $2 would give... (1 Reply)
Discussion started by: c_d
1 Replies
8. Shell Programming and Scripting
Hello-
Trying to add two numbers in a ksh shell scripts and i get this error every time I execute
stat1_ex.ksh: + : more tokens expected
stat1=`cat .stat1a.tmp | cut -f2 -d" "`
stat2=`cat .stat2a.tmp | cut -f2 -d" "`
j=$(($stat1 + $stat2)) # < Here a the like the errors out
echo $j... (3 Replies)
Discussion started by: Nomaad
3 Replies
9. Shell Programming and Scripting
I currently use this bash for loop below to reverse a set of tokens, example "abc def ghi" to "ghi def abc" but in looking at various sed one liner postings I notice two methods to reverse lines of text from a file (emulating tac) and reversing letters in a string (emulating rev) so I've spent some... (1 Reply)
Discussion started by: markc
1 Replies
10. UNIX for Dummies Questions & Answers
im trying to remove all occurences of " OF xyz " in a file where xyz could be any word assuming xyz is the last word on the line but I won't always be.
at the moment I have sed 's/OF.*//'
but I want a nicer solution which could be in pseudo code
sed 's/OF.* (next token)//'
Is... (6 Replies)
Discussion started by: seaten
6 Replies