10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hey guys,
I have wrote the following script to apply a module named "trinity" on my files. (it takes two input files and spit a trinity.fasta as output)
#!/bin/bash -l
#SBATCH -p node
#SBATCH -A <projectID>
#SBATCH -n 16
#SBATCH -t 7-00:00:00
#SBATCH --mem=128GB
#SBATCH --mail-type=ALL... (1 Reply)
Discussion started by: @man
1 Replies
2. Shell Programming and Scripting
I have around 300 files(*.rdf,*.fmb,*.pll,*.ctl,*.sh,*.sql,*.prog) which are of large size.
Around 8000 keywords(which will be in the file $keywordfile) needed to be searched inside those files.
If a keyword is found in a file..I have to insert the filename,extension,catagoery,keyword,occurrence... (8 Replies)
Discussion started by: millan
8 Replies
3. Shell Programming and Scripting
Hi All,
I need help to know the exact command when I grep large list of files. Either using ls or find command. However I do not want to find in the subdirectories as the number of subdirectories are not fixed. How do I achieve that.
I want something like this:
find ./ -name "MYFILE*.txt"... (2 Replies)
Discussion started by: angshuman
2 Replies
4. Shell Programming and Scripting
Hi,
What is the easiest way to list a directory with 1000s of filenames, grep it for a certain sequence of numbers, and if found to rename the file by the value you are grepping.
eg
The file I am examining will looks like this:
1234
1224343
2324
244
35665
If I am examining a list... (1 Reply)
Discussion started by: mantis
1 Replies
5. UNIX for Dummies Questions & Answers
I have a log file and I have two unique strings which represent the start and end of the text I want to obtain.
How can I get all the text inbetween this start string and the end string?
Thanks (2 Replies)
Discussion started by: chrisjones
2 Replies
6. Shell Programming and Scripting
Hi All
I want to send a file thru a mail with an attachment.
i tried using uuencode , but it says
"bash: uuencode: command not found"
and the same i am getting for mutt as well:
"bash: mutt: command not found"
Tried searching in all the forums but could not find anything... (2 Replies)
Discussion started by: Prateek007
2 Replies
7. UNIX for Dummies Questions & Answers
Hi
I have two files
File 1
alias HOME =..
alias DATA = ${DATA}/runtime1/test
alias SQL = ${DATA}/find1dir/test
alias SQL1 = ${HOME}/sql/orcl
alias SQL2 =... (2 Replies)
Discussion started by: ssuresh1999
2 Replies
8. Shell Programming and Scripting
OKAY----
Here's what I must do.
I have two files. I need to compare the two files such as with the diff command. I am adding FILENEW to FILEOLD
If fields $1, $2, $5, and 6 are the same, then I don't want to add FILENEW records to FILEOLD.
If they are not, then append the lines.
Is... (11 Replies)
Discussion started by: jeffpas
11 Replies
9. Shell Programming and Scripting
Hi All,
I am having a script in which I am greping some values and storing them from files with .err and .log extensions.
I feel I can do it better.But How?
Below is my piece of code.
oneerrors=`egrep -i -n "one" *.err *.log`
twoerrors=`egrep -i -n "two" *.err *.log` ... (2 Replies)
Discussion started by: Sreejith_VK
2 Replies
10. UNIX for Advanced & Expert Users
Hi, I wonder if anyone can help me. I have a file with about 200 lines in it. I am wanting to set up a Count so that it picks out each line at turn and edits the line. However i am having trouble pulling out the specific line. I have a feeling it will be done somehow by a grep -n but what ever i... (2 Replies)
Discussion started by: mariner
2 Replies