collect data from files


 
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Old 11-09-2011
collect data from files

there are 200 files named file1_0.pdb,file1_60.pdb etc....it looks like:

Code:
ATOM      1  N   VAL     1       8.897 -21.545  -7.276  1.00  0.00
ATOM      2  H1  VAL     1       9.692 -22.015  -6.868  1.00  0.00
ATOM      3  H2  VAL     1       9.228 -20.766  -7.827  1.00  0.00
ATOM      4  H3  VAL     1       8.289 -22.236  -7.693  1.00  0.00
TER
ATOM      5  CA  VAL     1       8.124 -20.953  -6.203  1.00  0.00
ATOM      6  HA  VAL     1       8.072 -19.874  -6.345  1.00  0.00
ATOM      7  CB  VAL     1       6.693 -21.515  -6.176  1.00  0.00
ATOM      8  HB  VAL     1       6.522 -22.024  -5.227  1.00  0.00
ATOM      9  CG1 VAL     1       5.684 -20.370  -6.330  1.00  0.00
ATOM     10 1HG1 VAL     1       5.854 -19.861  -7.279  1.00  0.00

i have to extract the part before TER and put in a different file...this has to be done on all 200 files...can anyone help me out....!!

Last edited by kanikasharma; 11-11-2011 at 02:36 AM.. Reason: code tags, please!
 
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pilot-wav(1)							    PILOT-LINK							      pilot-wav(1)

NAME
pilot-wav - Decodes Palm Voice Memo files to wav files you can read on your desktop SECTION
pilot-link: Userland conduits SYNOPSIS
pilot-wav [-p|--port <port>] [--version] [-?|--help] [-q|--quiet] [--usage] [-f|--fetch [file|all]] [-c|--convert file] OPTIONS
pilot-wav options -f, --fetch [file|all] Fetch all wav files or specified wav file from the Palm. -c, --convert file.wav.pdb Convert file.wav.pdb file to wav Conduit Options -p, --port port Use device file port to communicate with the Palm handheld. If this is not specified, pilot-wav will look for the $PILOTPORT environment variable. If neither are found or supplied, pilot-wav will print the usage information. -q, --quiet Suppress 'Hit HotSync button' message -v, --version Display version of pilot-wav. Help Options -h, --help Display the help synopsis for pilot-wav. --usage Display a brief usage message and exit without connecting. EXAMPLES
# Fetch all of the voice memo files from your Palm and save them to .wav files on your desktop machine pilot-wav -p /dev/pilot -f MyVoiceMemo.wav.pdb # Convert all voice memos found in MyVoiceMemo to .wav files on your desktop machine pilot-wav -c MyVoiceMemo.wav.pdb AUTHOR
This manual page was written by Neil Williams <linux@codehelp.co.uk> REPORTING BUGS
We have an online bug tracker. Using this is the only way to ensure that your bugs are recorded and that we can track them until they are resolved or closed. Reporting bugs via email, while easy, is not very useful in terms of accountability. Please point your browser to http://bugs.pilot-link.org: http://bugs.pilot-link.org and report your bugs and issues there. COPYRIGHT
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER- CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. SEE ALSO
pilot-link(7) 0.12.5 Copyright 1996-2007 FSF pilot-wav(1)