g_rama(1) GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c g_rama(1)
NAME
g_rama - computes Ramachandran plots
VERSION 4.5.4-dev-20110404-bc5695c
SYNOPSIS
g_rama -f traj.xtc -s topol.tpr -o rama.xvg -[no]h -[no]version -nice int -b time -e time -dt time -[no]w -xvg enum
DESCRIPTION
g_rama selects the phi/psi dihedral combinations from your topology file and computes these as a function of time. Using simple Unix
tools such as grep you can select out specific residues.
FILES
-f traj.xtc Input
Trajectory: xtc trr trj gro g96 pdb cpt
-s topol.tpr Input
Run input file: tpr tpb tpa
-o rama.xvg Output
xvgr/xmgr file
OTHER OPTIONS
-[no]hno
Print help info and quit
-[no]versionno
Print version info and quit
-nice int 19
Set the nicelevel
-b time 0
First frame (ps) to read from trajectory
-e time 0
Last frame (ps) to read from trajectory
-dt time 0
Only use frame when t MOD dt = first time (ps)
-[no]wno
View output .xvg, .xpm, .eps and .pdb files
-xvg enum xmgrace
xvg plot formatting: xmgrace, xmgr or none
SEE ALSO
gromacs(7)
More information about GROMACS is available at <http://www.gromacs.org/>.
Mon 4 Apr 2011 g_rama(1)