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ELASTIX(1) User Commands ELASTIX(1)
NAME
elastix - perform image registration
SYNOPSIS
elastix mandatory-args [optional-args]
DESCRIPTION
elastix registers a moving image to a fixed image. The registration-process is specified in the parameter file.
OPTIONS
Call elastix from the command line with mandatory arguments:
-f fixed image
-m moving image
-out output directory
-p parameter file, elastix handles 1 or more "-p"
Optional extra commands:
-fMask mask for fixed image
-mMask mask for moving image
-t0 parameter file for initial transform
-priority set the process priority to high or belownormal (Windows only)
-threads set the maximum number of threads of elastix
The parameter-file must contain all the information necessary for elastix to run properly. That includes which metric to use, which opti-
mizer, which transform, etc. It must also contain information specific for the metric, optimizer, transform, ... For a usable parame-
ter-file, see the website.
SEE ALSO
transformix(1)
Check the website http://elastix.isi.uu.nl, or mail elastix.support@gmail.com.
elastix version: 4.400 December 2010 ELASTIX(1)