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NCBI C++ Toolkit Dec 31 2008 (Default branch)

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Special Forums News, Links, Events and Announcements Software Releases - RSS News NCBI C++ Toolkit Dec 31 2008 (Default branch)
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Old 12-31-2008
NCBI C++ Toolkit Dec 31 2008 (Default branch)
The NCBI C++ Toolkit provides portable libraries and applications for assisting genetic science. These include libraries for networking, SQL and BerkeleyDB access, CGI and HTML handling, ASN.1 and XML handling, sequence alignment engines, sequence retrieval engines, BLAST database engines, FLTK and OpenGL graphics toolkits, and basic system utilities. License: Public Domain Changes:
This release adds a method to compute column-specific pseudocounts in PSI-BLAST. It refactors the grid services library. It adds unit test framework and error logging for all File API classes. It fixes pthread support on IRIX. It enhances support of XML serialization. It fixes support for Sybase. It adds support for smaller lookup tables for small queries. It adds an API to retrieve GenBank loader statistics. It has assorted other enhancements, speedups, and bugfixes. Image

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LEARN ABOUT DEBIAN

asn2xml

ASN2XML(1)						     NCBI Tools User's Manual							ASN2XML(1)

NAME

       asn2xml - translate biological data from ASN.1 to XML

SYNOPSIS

       asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s]

DESCRIPTION

       asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation.	It differs from asn2asn -x in that
       it converts packed sequence data back into human-readable ASCII text.

OPTIONS

       A summary of options is included below.

       -      Print usage message

       -b F   Input asnfile in text mode

       -e     Input is a Seq-entry

       -i filename
	      Read ASN.1 from filename (default is stdin)

       -l filename
	      Log errors to filename (default is stderr)

       -o filename
	      Write XML to filename (default is stdout)

       -s     Input is a Seq-submit

AUTHOR

       The National Center for Biotechnology Information.

SEE ALSO

       asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), /usr/share/doc/ncbi-tools-bin/README.asn2xml,
       /usr/share/doc/libncbi6/ncbixml.txt.gz

NCBI
								    2005-05-16								ASN2XML(1)