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Cain 0.7.1 (Stable branch)
11-16-2008
Cain performs stochastic and deterministic simulations of chemical reactions. It can spawn multiple simulation processes to utilize multi-core computers. It stores models, simulation parameters, and simulation results (populations and reaction counts) in an XML format. In addition, SBML models can be imported and exported. The models and simulation parameters can be read from input files or edited within the program. Solvers are implemented as command line executables, which makes it easy to launch batch jobs and simplifies the process of adding new solvers. Solvers include Gillespie's direct method, Gillespie's first reaction method, Gibson and Bruck's next reaction method, Tau-leaping, and Hybrid direct/tau-leaping. |
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sofa(1) sofa(1) NAME
sofa - SOFA GUI SYNOPSIS
sofa [OPTIONS] DESCRIPTION
SOFA is an Open Source framework primarily targeted at real-time simulation, with an emphasis on medical simulation. It is mostly intended for the research community to help develop newer algorithms, but can also be used as an efficient prototyping tool. Based on an advanced software architecture, it allows one to: * create complex and evolving simulations by combining new algorithms with algorithms already included in SOFA * modify most parameters of the simulation - deformable behavior, surface representation, solver, constraints, collision algorithm, etc. - by simply editing an XML file * build complex models from simpler ones using a scene-graph description * efficiently simulate the dynamics of interacting objects using abstract equation solvers * reuse and easily compare a variety of available methods OPTIONS
-h --help this help -s --start start the animation loop (default: 0 ) -p --factory In addition to the baz segments, also parse the blurfl headers. -g --gui choose the UI (batch|qt|glut) (default: qt ) -l --load load given plugins (default: ) AUTHORS
SOFA is currently developed by 3 INRIA teams: Alcove, Evasion and Asclepios but the project also benefited from the help of the CIMIT Sim Group, ETH Zurich and CSIRO. SEE ALSO
The full documentation for sofa is available at <http://www.sofa-framework.org> August 2008 sofa(1)