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NCBI C++ Toolkit Mar_17_2008 (Default branch)
04-18-2008
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TRNA2SAP(1) NCBI Tools User's Manual TRNA2SAP(1) NAME
trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object SYNOPSIS
trna2sap [-] [-a] [-c str] [-f str] [-i filename] [-j] [-m str] [-n str] [-o filename] [-p dir] [-r dir] [-s] [-t str] [-u] [-x str] DESCRIPTION
trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools. OPTIONS
A summary of options is included below. - Print usage message -a Add tRNAscan-SE citation -c str Comment -f str Substring Filter -i filename Single Input file (standard input by default) -j Just produce a five-column feature table, a la trna2tbl(1). -m str ReMark -n str Annotation Name (normally "tRNA"). -o filename Single Output file (standard output by default) -p dir Path to files -r dir Path for Results -s Ignore Pseudo tRNAs -t str Annotation Title (normally "tRNAscan-SE"). -u Ignore Undetermined tRNAs -x str File selection suffix with -p (.trna by default). AUTHOR
The National Center for Biotechnology Information. SEE ALSO
sequin(1), tbl2asn(1), trna2tbl(1). NCBI
2006-01-11 TRNA2SAP(1)