TRNA2SAP(1) NCBI Tools User's Manual TRNA2SAP(1)NAME
trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object
SYNOPSIS
trna2sap [-] [-a] [-c str] [-f str] [-i filename] [-j] [-m str] [-n str] [-o filename] [-p dir] [-r dir] [-s] [-t str] [-u] [-x str]
DESCRIPTION
trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI
tools.
OPTIONS
A summary of options is included below.
- Print usage message
-a Add tRNAscan-SE citation
-c str Comment
-f str Substring Filter
-i filename
Single Input file (standard input by default)
-j Just produce a five-column feature table, a la trna2tbl(1).
-m str ReMark
-n str Annotation Name (normally "tRNA").
-o filename
Single Output file (standard output by default)
-p dir Path to files
-r dir Path for Results
-s Ignore Pseudo tRNAs
-t str Annotation Title (normally "tRNAscan-SE").
-u Ignore Undetermined tRNAs
-x str File selection suffix with -p (.trna by default).
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO sequin(1), tbl2asn(1), trna2tbl(1).
NCBI 2006-01-11 TRNA2SAP(1)
Check Out this Related Man Page
ASNMACRO(1) NCBI Tools User's Manual ASNMACRO(1)NAME
asnmacro - process ASN.1 biological data per Sequin macros
SYNOPSIS
asnmacro [-] [-b] [-d] [-e] [-i filename] -m filename [-o filename] [-p path] [-r path] [-s str] [-x str]
DESCRIPTION
asnmacro is a command-line tool to run Sequin macros on annotated biological sequence data represented according to NCBI's ASN.1 specifica-
tions.
OPTIONS
A summary of options is included below.
- Print usage message
-b Input is Binary
-d Output is binary
-e Input is a Seq-Entry
-i filename
Single input file
-m filename
Macro file
-o filename
Single Output file
-p path
Path to multiple input files
-r path
Path for Results when processing multiple files
-s str Suffix for stripped (output) files
-x str Suffix for input files with -p (.sqn by default)
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO Psequin(1).
NCBI 2011-09-02 ASNMACRO(1)
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