massXpert mass spectrometry package 1.9.5 (Default branch)
The massXpert software package is a mass spectrometry environment for linear (bio-)polymers. It inherits all the innovations of GNU polyxmass. It allows the detailed definition of new polymer chemistries in the XpertDef module. These chemistry definitions are then used in the desktop calculator-like mass calculator (XpertCalc) and in the sophisticated polymer sequence editor and (bio-)chemical/mass spectrometric simulations module (XpertEdit). Available simulations include polymer and monomer chemical modifications, polymer sequence cleavage, gas-phase fragmentation, m/z ratio calculations, and more.
MMASS(1) General Commands Manual MMASS(1)NAME
mmass - a free mass spectrometry tool for proteomics
SYNOPSIS
mmass
DESCRIPTION
mmass is a free mass spectrometry tool for proteomics. Its main feature is its capability to load mass spectral data in its powerful mass
spectrum viewer. The program can load data in the following formats: mzData, mzXML, raw text. The mass spectrum viewer allows performing a
large number of operations commonly required when analyzing mass spectrometry data (zoom, pan, rapid delta-mass calculations, peak picking
and so forth). The program will allow defining peak lists, recalibrating spectra, performing some protein-only simulations and doing on-
line Mascot searches.
BIBLIOGRAPHICAL REFERENCES TO BE CITED
Strohalm M, Kavan D, Novak P, Volny M, Havlicek V: mMass 3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectromet-
ric Data. Anal Chem 82 (11), 4648-51 (2010). DOI:10.1021/ac100818g
Strohalm M, Hassman M, Koata B, Kodiek M: mMass data miner: an open source alternative for mass spectrometric data analysis. Rapid Commun
Mass Spec 22 (6), 905-908 (2008). DOI:10.1002/rcm.3444
SEE ALSO
mmass-modules (3), mmass-doc(7).
AUTHORS
Martin Strohalm <support@mmass.org>
Program author (contact him via http://www.mmass.org website's form).
Filippo Rusconi <rusconi-debian@laposte.net>
Man-page author for the Debian distribution.
COPYRIGHT
Copyright (C) 2005-2010 Martin Strohalm
Copyright (C) 2010,2011 Filippo Rusconi
This manual page was written by Filippo Rusconi <rusconi-debian@laposte.net> for the Debian system (but may be used by others). Permission
is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 3, published by the
Free Software Foundation.
On a Debian system the complete text of the GNU General Public License version 3 can be found in the file `-
/usr/share/common-licenses/GPL-3'.
November 2009 MMASS(1)