10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
The below command works in the terminal interactively but not as part of a bash script. I though maybe I needed to escape the "$dir" so it isn't interpreted literally, but that's not it. Thank you :).
interactively in terminal
dir=/path/to
new=$(ls "$dir"/*.csv -tr | tail -n 1) && echo... (6 Replies)
Discussion started by: cmccabe
6 Replies
2. Shell Programming and Scripting
I wish to replace "\\n" with a single white space.
The below does the job on command-line:
$ echo '/fin/app/scripts\\n/fin/app/01/sql' | sed -e 's#\\\\n# #g';
/fin/app/scripts /fin/app/01/sql
However, when i have the same code to a shell script it is not able to get me the same output:... (8 Replies)
Discussion started by: mohtashims
8 Replies
3. Shell Programming and Scripting
The below command moves all the .vcf files into the directory.
cp /home/cmccabe/Desktop/test/vcf/overall/stats/*.vcf /home/cmccabe/Desktop/NGS/annovar
When I use a bash wrapper the target.txt gets created but the text files do not get copied. All the paths are the same, but not sure why... (2 Replies)
Discussion started by: cmccabe
2 Replies
4. UNIX for Dummies Questions & Answers
Hi everyone
I have a problem with my script
If I try directly this command
/usr/bin/nice -n 19 mysqldump -u root --password="******" wiki_schneider -c | nice -n 19 gzip -9 > /point_de_montage/$(date '+%Y%m%d')-wiki-db.sql.gz
It works
But if I simply add this command in a script and... (8 Replies)
Discussion started by: picemma
8 Replies
5. UNIX for Dummies Questions & Answers
Options::
A)$shell
B)echo $ bash
C)echo $ O
D)$ O (1 Reply)
Discussion started by: raghugowda
1 Replies
6. Shell Programming and Scripting
Hi, the following command works in the terminal no problem.
samtools view -h rawlib.bam | perl -ne '{ @line = split( /\s+/ ); $match = 0; while( $line =~ /(\d+)M/g ) { $match = $match + $1 } if( $match >= 80 || $_ =~ /^\@/ ) { print $_ } }' | java -Xmx12G -jar... (8 Replies)
Discussion started by: jdilts
8 Replies
7. Shell Programming and Scripting
hello.
I get this text when using some command :
S | Name | Type | Version | Arch | Repository
--+-----------------+---------+---------+------+-------------
| AdobeReader_enu | package | 9.5.4-1 | i486 | zypper_local
I need to get "AdobeReader_enu" from the the pattern "Ado"... (7 Replies)
Discussion started by: jcdole
7 Replies
8. Shell Programming and Scripting
Hello.
I would like to ask your help regarding the cp command. We are using a cp command to create a back-up copy of our file but to no avail. It's just not working. We already checked the file and directory permissions and all seems correct.
We have a script (ftp.script) which calls on... (1 Reply)
Discussion started by: udelalv
1 Replies
9. Shell Programming and Scripting
typeset -l section
section=${2:-.}
what does these 2 lines meaning? (1 Reply)
Discussion started by: venkatababu
1 Replies
10. Shell Programming and Scripting
Hello,
So my knowledge of bash scripting is not that great and I have been trying to solve this problem on my own for awhile to no avail.
Here's the error I get when running it with an OS that uses bash 3.2.x:
testagain.sh: line 10: *-1: syntax error: operand expected (error token is... (2 Replies)
Discussion started by: forkandspoon
2 Replies