10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
In the awk below which does execute I get output that is close, except for all the lines that start with a # are removed. Some lines have one others two or three and after the script adds the
ID= to the fields below the pattern in the awk, I can not seem to add the # lines back to the output. ... (5 Replies)
Discussion started by: cmccabe
5 Replies
2. Shell Programming and Scripting
I am trying to use awk to match the NM_ in file with $1 of id which is tab-delimited. The NM_ will always be in the line of file that starts with > and be after the second _. When there is a match between each NM_ and id, then the value of $2 in id is substituted or used to update the NM_. Each NM_... (3 Replies)
Discussion started by: cmccabe
3 Replies
3. Shell Programming and Scripting
I have tab delimited input that prints out in the format below:
I am trying to add field headers to $5 and $6. Not sure if sed is the best tool but my attempt is below. Thank you :).
$5 = REF
$6 = ALT
file
ID CHR START STOP
123 1 100 200 A ... (6 Replies)
Discussion started by: cmccabe
6 Replies
4. Shell Programming and Scripting
I am trying to add a tab after the last digit in $3 in the input. The grep below is all I can think off. Thank you :)
sed -n 's/:/&/p' input
input
chr1 955542 955763AGRN-6|gc=75
chr1 957570 957852AGRN-7|gc=61.2
chr1 976034 976270AGRN-9|gc=74.5
desired output
chr1... (5 Replies)
Discussion started by: cmccabe
5 Replies
5. Shell Programming and Scripting
Gents,
I have many files to change increasing 40000 in specific field.
Can you help me with a command with sed or awk to fix this problem.
Where the the field has Marker FDU. I need to add 40000 plus
example
Marker FDU 27152.00
Marker FDU 67152.00
I should... (4 Replies)
Discussion started by: jiam912
4 Replies
6. Shell Programming and Scripting
Hi,
I have a file like below
PRUM,67016800 ,CC ,C1,67016800 , ,Y,Y,2 ,CK,BX,FOX ,00000001,EA,00000001,20141120 00:00:00, ,N,Y,Y,CK ABCDEF... (7 Replies)
Discussion started by: mady135
7 Replies
7. Shell Programming and Scripting
Hello,
i need help with awk.
I have this file:
cat number
DirB port 67 er_enc_out 0 er_bad_os 0
DirB port 71 er_enc_out 56 er_bad_os 0
DirB port 74 er_enc_out 0 er_bad_os 0
DirB port 75 ... (4 Replies)
Discussion started by: elilmal
4 Replies
8. Shell Programming and Scripting
I'm trying to update a text file via sed/awk, after a lot of searching I still can't find a code snippet that I can get to work.
Brief overview:
I have user input a line to a variable, I then find a specific value in this line 10th field in this case. After asking for new input and doing some... (14 Replies)
Discussion started by: crownedzero
14 Replies
9. Shell Programming and Scripting
I need to replace specific field (x) in a table with new value (y):
Input:
1 2 3 4
5 x 6 7
8 9 0 0
Output:
1 2 3 4
5 y 6 7
8 9 0 0
I have no idea how to do this. (10 Replies)
Discussion started by: setepo
10 Replies
10. Shell Programming and Scripting
Hi Everyone,
a.txt
a b c 1 e e e e e
a b c 2 e e e e e
the output is
a b c 1 e e e e e
a 00b c 2 e e e e e
when 4th field = '2', then add '00' in the front of 2nd field value.
Thanks (9 Replies)
Discussion started by: jimmy_y
9 Replies