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Use same file selected in first bash process that has matching digits in it fot the second

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Top Forums Shell Programming and Scripting Use same file selected in first bash process that has matching digits in it fot the second
# 1  
Old 07-23-2016
Sorry about that, I've amended the script slightly so it should work as expected now:

Code:
#!/bin/bash
FILESDIR=/home/cmccabe/Desktop/files
ANNOVARDIR=/home/cmccabe/Desktop/annovar

PS3="please select a file to analyze with a panel: "
select file in $(cd ${FILESDIR};ls *); do
        [[ -z ${file} ]] && printf "Pick a file" || break
done

file1=${FILESDIR}/${file}
file2=$(ls ${ANNOVARDIR}/${file%%_*}*)
printf "File 1 is: ${file1}\n"
printf "File 2 is: ${file2}\n"

It looks like basename isn't really required as you are dealing with the file names themselves straight from the select loop. Then when you create the file1 variable you append the directory in front of it.
This User Gave Thanks to pilnet101 For This Post:
cmccabe
# 2  
Old 07-23-2016
works perfect.... thank you for your help and explanations, I really appreciate them Smilie.
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