I have a bash that downloads a list of files as a text file using wget. What I now need to do is store those files names and pass them to a download call also using wget.
List.txt in /home directory
Download
where file to download would be FilterDuplicates.html, then after that downloads file1.bam, then file2.bam, then file3.bam, then file1.vcf.gz, then file2.vcf.gz, then file3.vcf.gz. Each one of the bam files is ~20GB all others are 10MB or less. Thank you .
edit:
It looks like I need to alter the command that downloads the list to include the url, but I'm not sure how.
list
Last edited by cmccabe; 02-08-2016 at 05:46 PM..
Reason: added edit
I have a collection of directories, for example as below
I want to create a loop that goes in the first directory and picks up the *hhz*.sac.pzs
filename in a variable, and the other files matching *hhz*.sac in another variable (however I do not want to pick the *hhz*.sac.pzs). This is because... (4 Replies)
In the bash below when the program is opened the download function runs and downloads the getCSV file and on the screen "Downloading getCSV.csv:%" displays and when it completes the menu function is called. However, as of now the bash opens and closes after a few seconds and I'm not sure... (4 Replies)
I am attempting to write a bash that starts by using wget and getting the following errors:
Stand-alone code that works:
wget -O getCSV.txt http://172.24.xxx.xxx/data/getCSV.csv
c:\cygwin\home\cmccabe\NGS.sh: line 2: $'\r': command not found
: No such file or directorysh: line 3:... (2 Replies)
hi,
how can i take the file names from a directory and store only the filenames in the file.
suppose i have a directory which contains the following files and subdirectories.
$ ls -ltr
total 16
-rw-rw-r-- 1 adm etc 4 Aug 6 20:37 s1.txt
-rw-rw-r-- 1 adm etc 4 Aug 6 20:37 s2.txt... (11 Replies)
Hello All,
I have a Virtual Machine that I basically use for just testing stuff on. It is running SLES 11.1 and Apache2.
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just to check and make sure I can... (4 Replies)
Hi,
I need help regarding below concern.
There is a script and it has 7 existing files(in a path say,. usr/appl/temp/file1.txt) and I need to create one new blank file say “file_count.txt” in the same script itself.
Then the new file <file_count.txt> should store all the 7 filenames and... (1 Reply)
I want to create a temp file which is named based on a search string. The search string may contain spaces or characters that aren't supposed to be used in filenames so I want to strip those out.
My thought was to use 'tr' with but the result is the opposite of what I want:
$ echo "test... (5 Replies)
I'm trying to search all .odt files in a directory for a string in the text of the file.
I've found a bash script that works, except that it can't handle whitespace in the filenames.
#!/bin/bash
if ; then
echo "Usage: searchodt searchterm"
exit 1
fi
for file in $(ls *.odt); do
... (4 Replies)
Hi,
I'm trying to write a script that reads filenames from a file and use these filenames in a loop. The filenames are all on one line and the problem is that these filenames have wildcards like * and braces like in them.
Right now what I'm doing is something like this:
echo "reading from... (0 Replies)
The script below is giving me grief! The error message says
/download.bash: line 16: syntax error near unexpected token `else'
./download.bash: line 16: `else wget "http://downloads.sourceforge.net/hibernate/hibernate-3.2.5.ga.zip?modtime=1185893922&big_mirror=1"
'
I think it must be a... (1 Reply)