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Wget in bash

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# 1  
Old 04-28-2015
Wget in bash
I am attempting to write a bash that starts by using wget and getting the following errors:

Stand-alone code that works:
Code:
 wget -O getCSV.txt http://172.24.xxx.xxx/data/getCSV.csv

Code:
c:\cygwin\home\cmccabe\NGS.sh: line 2: $'\r': command not found
: No such file or directorysh: line 3: cd: C:\Users\cmccabe\Desktop\wget
--2015-04-28 11:32:34--  http://172.24.xxx.xxx/data/getCSV.csv%0D%0D
Connecting to 172.24.xxx.xx:80... connected.
HTTP request sent, awaiting response... 404 NOT FOUND
2015-04-28 11:32:34 ERROR 404: NOT FOUND.

c:\cygwin\home\cmccabe\NGS.sh: line 6: $'\r': command not found
c:\cygwin\home\cmccabe\NGS.sh: line 7: $'{\r': command not found


What is the id of the NGS patient, use a comma between multiple:

I have attached the .sh as well. Thank you Smilie.
NGS.sh (547 Bytes) 
# 2  
Old 04-28-2015
i don't use cygwin but I know bash and it's complaining of your line endings. Use an editor that doesn't put \r in your files. you can strip them many ways. the simplest is: tr -d '\r' NGS.sh > newNGS.sh.
This User Gave Thanks to neutronscott For This Post:
cmccabe
# 3  
Old 04-28-2015
Code:
 tr -d '\r' NGS.sh > newNGS.sh
tr: extra operand ‘NGS.sh'
Only one string may be given when deleting without squeezing repeats.
Try 'tr --help' for more information.

I use notepad ++ and forgot to change the EOL to unix. The line endings seemed to be fixed but now this error:

Code:
c:\cygwin\home\cmccabe\NGS.sh: line 4: -O: command not found
http://: Invalid host name.

Thank you Smilie.

---------- Post updated at 12:43 PM ---------- Previous update was at 12:07 PM ----------

I figured it out... thank you Smilie.
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