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1. Shell Programming and Scripting
I have a fasta file as follows
>sp|Q8WWQ8|STAB2_HUMAN Stabilin-2 OS=Homo sapiens OX=9606 GN=STAB2 PE=1 SV=3
MMLQHLVIFCLGLVVQNFCSPAETTGQARRCDRKSLLTIRTECRSCALNLGVKCPDGYTM
ITSGSVGVRDCRYTFEVRTYSLSLPGCRHICRKDYLQPRCCPGRWGPDCIECPGGAGSPC
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2. Shell Programming and Scripting
I have a fasta file as follows
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MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
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KGVTSTRVYERA
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3. UNIX for Dummies Questions & Answers
Hi All,
i worte a shell script which will zcat the .gz file and write it in to a tmp file and then again cat the file and convert it to Dos mode. Next step is i am greping the file to search for the particular string on the 1st line and if the string does not exits it will insert the 1st line... (1 Reply)
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4. UNIX for Dummies Questions & Answers
salary_range_report()
{
echo -e ${underline}$redYellow"\nSalary Range Report\n"
tput sgr0
count_0_to_999=0
count_1000_to_2999=0
count_2000_to_5999=0
count_6000_to_9999=0
count_10000_above=0
for i in `cut -d "," -f4 $PAYROLL` #Loop Salary
do
if &&
then
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Discussion started by: eggisbad
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5. Shell Programming and Scripting
Hi,
I have a fixed width file.
The way this file works is say for example there are 30 columns in it each with different sizes say 10,5,2, etc...
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6. Shell Programming and Scripting
Hopefully someone here can point me in the correct direction.
I'm working on a username migration and am trying to map my users ols usernames to the new ones.
Right now every user has a username of firstname.lastname i.e. john.doe
I'm trying to create a bash or python script that will take... (3 Replies)
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7. Shell Programming and Scripting
Hello all,
Here is what my bash script does: sums number columns, saves the tot in new column, outputs if tot >= threshold val:
> cat getnon0file.sh
#!/bin/bash
this="getnon0file.sh"
USAGE=$this"
InFile="xyz.38"
Min="0.05"
#
awk '{sum=0; for(n=2; n<=NF; n++){sum+=$n};... (4 Replies)
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8. Shell Programming and Scripting
I have a file that is a log file for web traffic. I would like to convert the timestamp in it to unix time or epoch time.
I am using the date command in conjunction with awk to try to do this. Just
myfile:
28/Aug/1995:00:00:38 1 /pub/atomicbk/catalog/home.gif 813
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9. Shell Programming and Scripting
My satellite receiver is equipped with busybox, so a small linux version.
That is why I can not use certain commands like #tomorrow in date commands or #date -d "+1 day"
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SU(1) BSD General Commands Manual SU(1)
NAME
su -- substitute user identity
SYNOPSIS
su [-] [-flm] [login [args]]
DESCRIPTION
The su utility requests appropriate user credentials via PAM and switches to that user ID (the default user is the superuser). A shell is
then executed.
PAM is used to set the policy su(1) will use. In particular, by default only users in the ``admin'' or ``wheel'' groups can switch to UID 0
(``root''). This group requirement may be changed by modifying the ``pam_group'' section of /etc/pam.d/su. See pam_group(8) for details on
how to modify this setting.
By default, the environment is unmodified with the exception of USER, HOME, and SHELL. HOME and SHELL are set to the target login's default
values. USER is set to the target login, unless the target login has a user ID of 0, in which case it is unmodified. The invoked shell is
the one belonging to the target login. This is the traditional behavior of su.
The options are as follows:
-f If the invoked shell is csh(1), this option prevents it from reading the ``.cshrc'' file.
-l Simulate a full login. The environment is discarded except for HOME, SHELL, PATH, TERM, and USER. HOME and SHELL are modified as
above. USER is set to the target login. PATH is set to ``/bin:/usr/bin''. TERM is imported from your current environment. The
invoked shell is the target login's, and su will change directory to the target login's home directory.
- (no letter) The same as -l.
-m Leave the environment unmodified. The invoked shell is your login shell, and no directory changes are made. As a security precau-
tion, if the target user's shell is a non-standard shell (as defined by getusershell(3)) and the caller's real uid is non-zero, su
will fail.
The -l (or -) and -m options are mutually exclusive; the last one specified overrides any previous ones.
If the optional args are provided on the command line, they are passed to the login shell of the target login. Note that all command line
arguments before the target login name are processed by su itself, everything after the target login name gets passed to the login shell.
By default (unless the prompt is reset by a startup file) the super-user prompt is set to ``#'' to remind one of its awesome power.
ENVIRONMENT
Environment variables used by su:
HOME Default home directory of real user ID unless modified as specified above.
PATH Default search path of real user ID unless modified as specified above.
TERM Provides terminal type which may be retained for the substituted user ID.
USER The user ID is always the effective ID (the target user ID) after an su unless the user ID is 0 (root).
FILES
/etc/pam.d/su PAM configuration for su.
EXAMPLES
su man -c catman
Runs the command catman as user man. You will be asked for man's password unless your real UID is 0.
su man -c 'catman /usr/share/man /usr/local/man'
Same as above, but the target command consists of more than a single word and hence is quoted for use with the -c option being passed
to the shell. (Most shells expect the argument to -c to be a single word).
su -l foo
Simulate a login for user foo.
su - foo
Same as above.
su - Simulate a login for root.
SEE ALSO
csh(1), sh(1), group(5), passwd(5), environ(7), pam_group(8)
HISTORY
A su command appeared in Version 1 AT&T UNIX.
BSD
September 13, 2006 BSD