10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have wrote the following script to apply a module named "trinity" on my files. (it takes two input files and spit a trinity.fasta as output)
#SBATCH -p node
#SBATCH -A <projectID>
#SBATCH -n 16
#SBATCH -t 7-00:00:00
#SBATCH --mail-type=ALL... (1 Reply)
Discussion started by: @man
2. Shell Programming and Scripting
I want to use egrep on multiple files and the results should be output to multiple files. I am using the below code in my shell script(working in Ksh shell). However with this code I am not attaining the desired results.
for file in... (4 Replies)
Discussion started by: am24
3. Shell Programming and Scripting
I have below files in one directory. the file name has date and time portion which is exactly the file be created. I need keep only lasted created file which is abc_20140101_1550 and remove rest of the file.
abc_20140101_1500... (2 Replies)
Discussion started by: ken6503
4. Shell Programming and Scripting
The following code will split the infile into multiple files. However, I need it to insert the same first 3 lines from the original input file into each splitted file. How do I modify my script below to do so:
print -n "Enter file name to split? " ; read infile
echo "Invalid file... (4 Replies)
Discussion started by: mrn6430
5. UNIX for Dummies Questions & Answers
Hi. I have a large number of files with names like:
There is actually a space after the underscore. These files are numbered numerically, i.e. t_ 0.20000E-02.dat, t_ 0.21000E-02.dat, t_ 0.22000E-02.dat and so on.
What I would like to do is rename such that the file with... (8 Replies)
Discussion started by: lost.identity
6. Shell Programming and Scripting
HI I have a list of files that are incorrectely names and I need to move them to new name .. I tried few things that has not worked so far can you help ?
I need to rename all thes eifle ( tere are over 100 )
xldn0439bap.orig.new... (12 Replies)
Discussion started by: mnassiri
7. Shell Programming and Scripting
I'm new in awk and I need some help.
I have a folder with a lot of files and I need that awk do something in each file and print a new file with the output. The input file name should be modified when I print the outpu files.
Thanks in advance for help!
ciao (5 Replies)
Discussion started by: gabrysfe
8. UNIX for Dummies Questions & Answers
I'd like to process multiple files. For example:
Each file contains several lines of data. I want to extract a piece of data and output it to a new file.
file1.txt ----> newfile1.txt
file2.txt ----> newfile2.txt
file3.txt ----> newfile3.txt
Here is... (3 Replies)
Discussion started by: Liverpaul09
9. Shell Programming and Scripting
I am trying to figure out a way to combine multiple sources with different data on a single file, and I am trying to find the best way to do it.
I have multiple files, let's say A, B, C and D. A has a field in common with B, B has a field in common with C, and C has a field in... (2 Replies)
Discussion started by: ppucci
10. Shell Programming and Scripting
I needs to split *.txt files from single directory depends on the some mutltiple input values. i have wrote the code like below
for file in *.txt
grep -i -h "value1|value2" $file > $file;
My requirment is more input values needs to be given in grep; let us say 50... (3 Replies)
Discussion started by: arund_01