10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am trying to use awk to find all the $3 values in file2 that are between $2 and $3 in file1. If a value in $3 of file2 is between the file1 fields then it is printed along with the $6 value in file1. Both file1 and file2 are tab-delimited as well as the desired output. If there is nothing to... (4 Replies)
Discussion started by: cmccabe
4 Replies
2. Shell Programming and Scripting
file1
chr pos1 pos2 pos3 pos4
1)chr1 1000 2000 3000 4000
2)chr1 1380 1480 6800 7800
3)chr1 6700 7700 1200 2200
4)chr2 8500 9500 5670 6670
file2
chr pos1 pos2 pos3 pos4
1)chr2 8500 9500 5000 6000
2)chr1 6700 7700 1200 2200
3)chr1 1380 1480 6700 7700
4)chr1 1000 2000 4900 5900
I... (2 Replies)
Discussion started by: data_miner
2 Replies
3. Programming
performing this code to read from file and print each character in separate line
works well with ASCII encoded text
void
preprocess_file (FILE *fp)
{
int cc;
for (;;)
{ cc = getc (fp);
if (cc == EOF)
break;
printf ("%c\n", cc);
}
}
int
main(int... (1 Reply)
Discussion started by: khaled79
1 Replies
4. Shell Programming and Scripting
Hi all,
I have two files, chap.txt and complex.txt.
chap.txt looks like this:
a
d
l
m
r
k
complex.txt looks like this:
a c d e l m n j
a d l p q r
c p r m
......... (7 Replies)
Discussion started by: AshwaniSharma09
7 Replies
5. UNIX for Dummies Questions & Answers
Hi All,
I wish to merge two files:
file1: with header
rsSNP-ID Chromosome Chr-Pos
rs171 1 175261679
rs242 1 20869461
rs538 1 6160958
file2: without header
disease:AAT deficiency:M0525101 rs1243168 20109307 1
disease:AAT deficiency:M0525101 rs4900229 20109307 1... (3 Replies)
Discussion started by: luoruicd
3 Replies
6. UNIX for Dummies Questions & Answers
First time poster, but the forum has saved my bacon more times than... Lots.
Anyway, I have a text file, and wanted to use Awk (or any other sensible program) to print out overlapping sections, or arbitrary length. To describe by example, for file
1
2
3
4
5
etc...
I want the out put... (3 Replies)
Discussion started by: matfald
3 Replies
7. Shell Programming and Scripting
I would like to print the output beginning with a header from a seperate file like this:
awk 'BEGIN{FS="_";print ((getline < "header.txt")>0)} { if (! ($0 ~ /EL/ ) print }" input.txtWhat am i doing wrong? (4 Replies)
Discussion started by: sdf
4 Replies
8. Shell Programming and Scripting
I have a large 3479 line .csv file, the content of which looks likes this:
1;0;177;170;Guadeloupe;x
2;127;171;179;Antigua and Barbuda;x
3;170;144;2;Umpqua;x
4;170;126;162;Coos Bay;x
...
1205;46;2;244;Unmak Island;x
1206;47;2;248;Yunaska Island;x
1207;0;2;240;north sea;x... (5 Replies)
Discussion started by: kalelovil
5 Replies
9. Shell Programming and Scripting
Hello UNIX experts,
I have 124 text files in a directory. I want to extract the 45678th line of all the files sequentialy by file names. The extracted lines should be printed in the output file on seperate lines.
e.g. The input Files are one.txt, two.txt, three.txt, four.txt
The cat of four... (1 Reply)
Discussion started by: yogeshkumkar
1 Replies
10. Shell Programming and Scripting
Hello I am facing a scenario where I have a file with XML content and I am running shell script over it. But the problem is the XML is getting updated with new services. In the below scenario, my script takes values from the xml file from one service name say ABCD. Since there are multiple, it is... (8 Replies)
Discussion started by: chiru_h
8 Replies