Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: Print the overlapping entries in 2 files to separate file
Top Forums Shell Programming and Scripting Print the overlapping entries in 2 files to separate file Post 302884791 by raj_k on Wednesday 22nd of January 2014 12:00:07 AM
Old 01-22-2014
In file1 and we have to check for the overlpping regions based on column 2 and 3. and if overlapps are found whole lines have to be printed. the lines of first file followed by the lines of second file
Eg:
Code:
22	25      
23	25      
23	25  

24	25
21	26

so
output
Code:
chr1    22      25      rbc     nmb
chr1    23      25      bbc     ddd
chr1    23      25      rds     jkj
chr1    24      25      qws     bbv
chr1    21      26      nbn     mnm

please let me know if there is still any confusion
Last edited by raj_k; 01-22-2014 at 06:38 AM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Break a file into separate files

Hello I am facing a scenario where I have a file with XML content and I am running shell script over it. But the problem is the XML is getting updated with new services. In the below scenario, my script takes values from the xml file from one service name say ABCD. Since there are multiple, it is... (8 Replies)
Discussion started by: chiru_h
8 Replies

2. Shell Programming and Scripting

extract nth line of all files and print in output file on separate lines.

Hello UNIX experts, I have 124 text files in a directory. I want to extract the 45678th line of all the files sequentialy by file names. The extracted lines should be printed in the output file on seperate lines. e.g. The input Files are one.txt, two.txt, three.txt, four.txt The cat of four... (1 Reply)
Discussion started by: yogeshkumkar
1 Replies

3. Shell Programming and Scripting

awk/sed script to print each line to a separate named file

I have a large 3479 line .csv file, the content of which looks likes this: 1;0;177;170;Guadeloupe;x 2;127;171;179;Antigua and Barbuda;x 3;170;144;2;Umpqua;x 4;170;126;162;Coos Bay;x ... 1205;46;2;244;Unmak Island;x 1206;47;2;248;Yunaska Island;x 1207;0;2;240;north sea;x... (5 Replies)
Discussion started by: kalelovil
5 Replies

4. Shell Programming and Scripting

awk print header as text from separate file with getline

I would like to print the output beginning with a header from a seperate file like this: awk 'BEGIN{FS="_";print ((getline < "header.txt")>0)} { if (! ($0 ~ /EL/ ) print }" input.txtWhat am i doing wrong? (4 Replies)
Discussion started by: sdf
4 Replies

5. UNIX for Dummies Questions & Answers

Awk: Print out overlapping chunks of file - rows 0-20,10-30,20-40 etc.

First time poster, but the forum has saved my bacon more times than... Lots. Anyway, I have a text file, and wanted to use Awk (or any other sensible program) to print out overlapping sections, or arbitrary length. To describe by example, for file 1 2 3 4 5 etc... I want the out put... (3 Replies)
Discussion started by: matfald
3 Replies

6. UNIX for Dummies Questions & Answers

Merge two files with non-overlapping identities

Hi All, I wish to merge two files: file1: with header rsSNP-ID Chromosome Chr-Pos rs171 1 175261679 rs242 1 20869461 rs538 1 6160958 file2: without header disease:AAT deficiency:M0525101 rs1243168 20109307 1 disease:AAT deficiency:M0525101 rs4900229 20109307 1... (3 Replies)
Discussion started by: luoruicd
3 Replies

7. Shell Programming and Scripting

Compare 2 files and print matches and non-matches in separate files

Hi all, I have two files, chap.txt and complex.txt. chap.txt looks like this: a d l m r k complex.txt looks like this: a c d e l m n j a d l p q r c p r m ......... (7 Replies)
Discussion started by: AshwaniSharma09
7 Replies

8. Programming

Read text from file and print each character in separate line

performing this code to read from file and print each character in separate line works well with ASCII encoded text void preprocess_file (FILE *fp) { int cc; for (;;) { cc = getc (fp); if (cc == EOF) break; printf ("%c\n", cc); } } int main(int... (1 Reply)
Discussion started by: khaled79
1 Replies

9. Shell Programming and Scripting

Identify the overlapping and non overlapping regions

file1 chr pos1 pos2 pos3 pos4 1)chr1 1000 2000 3000 4000 2)chr1 1380 1480 6800 7800 3)chr1 6700 7700 1200 2200 4)chr2 8500 9500 5670 6670 file2 chr pos1 pos2 pos3 pos4 1)chr2 8500 9500 5000 6000 2)chr1 6700 7700 1200 2200 3)chr1 1380 1480 6700 7700 4)chr1 1000 2000 4900 5900 I... (2 Replies)
Discussion started by: data_miner
2 Replies

10. Shell Programming and Scripting

awk to print line is values between two fields in separate file

I am trying to use awk to find all the $3 values in file2 that are between $2 and $3 in file1. If a value in $3 of file2 is between the file1 fields then it is printed along with the $6 value in file1. Both file1 and file2 are tab-delimited as well as the desired output. If there is nothing to... (4 Replies)
Discussion started by: cmccabe
4 Replies

LEARN ABOUT CENTOS

locale::codes::langext

Locale::Codes::LangExt(3)				User Contributed Perl Documentation				 Locale::Codes::LangExt(3)

NAME

       Locale::Codes::LangExt - standard codes for language extension identification

SYNOPSIS

	  use Locale::Codes::LangExt;

	  $lext = code2langext('acm');		       # $lext gets 'Mesopotamian Arabic'
	  $code = langext2code('Mesopotamian Arabic'); # $code gets 'acm'

	  @codes   = all_langext_codes();
	  @names   = all_langext_names();

DESCRIPTION

       The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in
       the IANA language registry.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language
       registry codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or
       a constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $lext = code2langext('acm','alpha');
	  $lext = code2langext('acm',LOCALE_LANGEXT_ALPHA);

       The codesets currently supported are:

       alpha
	   This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic.

	   This is the default code set.

ROUTINES

       code2langext ( CODE [,CODESET] )
       langext2code ( NAME [,CODESET] )
       langext_code2code ( CODE ,CODESET ,CODESET2 )
       all_langext_codes ( [CODESET] )
       all_langext_names ( [CODESET] )
       Locale::Codes::LangExt::rename_langext  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::LangExt::add_langext  ( CODE ,NAME [,CODESET] )
       Locale::Codes::LangExt::delete_langext  ( CODE [,CODESET] )
       Locale::Codes::LangExt::add_langext_alias  ( NAME ,NEW_NAME )
       Locale::Codes::LangExt::delete_langext_alias  ( NAME )
       Locale::Codes::LangExt::rename_langext_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangExt::add_langext_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangExt::delete_langext_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.iana.org/assignments/language-subtag-registry
	   The IANA language subtag registry.

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 2011-2013 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.16.3							    2013-02-27						 Locale::Codes::LangExt(3)
All times are GMT -4. The time now is 09:17 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy