10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
awk -F, ' NR>1 {
BEGIN{
chr=$2
}
END{
for (k in chr) {print k}
}
} ' $gene_file
I've a really simple code. I want to store gene name and it's chromosome and in the end print them.
I'm skipping line one as it contains headers.
But I don't know why I get error as: (2 Replies)
Discussion started by: genome
2 Replies
2. Shell Programming and Scripting
I know the below code worked, but the syntax appears to be wrong and I can not seem to correct it. Thank you :).
awk 'FNR==NR {E; next }>$3 in E {print $3, $5}' medical_exome__genes.txt RefSeqGene.txt > update.txt
awk: cmd. line:1: FNR==NR {E; next }>$3 in E {print $3, $5}
awk: cmd.... (2 Replies)
Discussion started by: cmccabe
2 Replies
3. Shell Programming and Scripting
Could somebody gently point out the error of my ways in the below (the flu I'm fighting might be contributing to my current haplessness)
awk -F="\t" \
'{
for (i = 1; i <= NR; i++);
FNR == i;
{
if (length($3) < 56 && length($1) > 56)
$1=($1" "$2); $2=$3; $3=$4;
... (1 Reply)
Discussion started by: Andrew767
1 Replies
4. Cybersecurity
I have been asked to look at a problem with implementing SSH on an HP-UX server which a colleague has set up. Users connect through PuTTY. When I try to establish a connection I see the following message:
Usage: -ssh host
Options:
-l user Log in using this user name.
-n ... (6 Replies)
Discussion started by: j_wealleans
6 Replies
5. Shell Programming and Scripting
Hi All,
I wrote a simple script.sh program
for i in seq (22)
do awk '$1==${i}' file1.txt|awk '{print $2}'> file${i}_study.txt
done
and then run it
%bash
%chmod +x script.sh
% ./script.sh
Give me error
awk: $1==${i}
awk: ^ syntax error
Do you have any idea why... (3 Replies)
Discussion started by: senayasma
3 Replies
6. Shell Programming and Scripting
more report2.txt
how to modify the AWK to print above out put for given n no of inputs using report2.txt file?
out put should be (3 Replies)
Discussion started by: kanakaraju
3 Replies
7. Shell Programming and Scripting
Hi, I can't see what is wrong with the following command.
I am extracting a dollar amount (AMT_REJ, 6th field) from a comma delimited record and need to output it as numeric, removing the $sign and decimal point and output to another file. Everything seems to work except the $ sign which I need... (1 Reply)
Discussion started by: ski
1 Replies
8. UNIX for Dummies Questions & Answers
hi there
i write one awk script file in shell programing
the code is related to dd/mm/yy to month, day year format
but i get an error
please can anybody help me out in this problem ??????
i give my code here including error
awk `
# date-month -- convert mm/dd/yy to month day,... (2 Replies)
Discussion started by: Herry
2 Replies
9. UNIX for Dummies Questions & Answers
Due to some syntax error, my below code is not working.
#!/usr/bin/ksh
nawk '
BEGIN {
cur_val=0; cur_zero=0; cur_nine=0;
sum_zero=0; sum_nine=0;
}
/^/ {
cur_val=substr($0,5,2);
if("cur_val" == "0")
{
... (3 Replies)
Discussion started by: lokiman
3 Replies
10. UNIX for Dummies Questions & Answers
can anyone see the awk syntax error near line 1? I keep getting this error and I'm not familiar with awk very well yet so it is hard for me to see the errors.
fyi: deleteuser* refers to files in the directory where each one ends with a different date
ls -1 /mfupload/prod02/ftp/deleteuser* |... (12 Replies)
Discussion started by: k@ssidy
12 Replies